Co-expression analysis

Gene ID HgAffx.15832.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g41530: - (HF=6e-1)
Module size 6 genes
NF 0.07
%ile 22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.79HgAffx.15832.1.S1_atCB281162--6e-1At5g41530-O.I.H.G.S.X.
0.1923.70.93PsAffx.psHB012xG08f_atPsAffx.psHB012xG08f--2e-1At1g53580GLY3 (GLYOXALASE II 3)O.I.H.G.S.X.
0.1619.70.92HgAffx.23882.1.S1_atBF013967--2e-1At1g52695phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.0710.20.93HgAffx.16208.1.S1_atCB935526--5e+0At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.069.00.93GmaAffx.25527.1.S1_atBM525182--3e+0At4g38800ATMTN1O.I.H.G.S.X.
0.024.50.94HgAffx.19033.4.A1_atCK350593--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.098.0GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
3.897.0GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM201099Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.296.0GSM29443186_2456.2J.R220P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.296.0GSM29364168_2065.2B.R129U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.221586.1.S1_at, orthologous to the query gene, HgAffx.15832.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8497.1PtpAffx.221586.1.S1_atAt5g41530hypothetical protein-2e-9At3g03270universal stress protein (USP) family protein / early nodulin ENOD18 family proteinO.I.H.G.S.X.
0.7493.8PtpAffx.212088.1.S1_s_atAt5g41530DNA methyltransferase /// DNA methyltransferase-3e-49At5g49160MET1 (METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7493.8PtpAffx.212088.1.S1_atAt5g41530DNA methyltransferase-3e-49At5g49160MET1 (METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7192.6PtpAffx.70374.1.S1_atAt5g41530hypothetical protein-2e-9At2g21620RD2O.I.H.G.S.X.
0.6588.6PtpAffx.143852.1.S1_s_atAt5g41530hypothetical protein-2e-21At1g21730kinesin-related protein (MKRP1)O.I.H.G.S.X.
0.6388.1PtpAffx.157551.1.S1_s_atAt5g41530hypothetical protein-4e+0At5g02440unknown proteinO.I.H.G.S.X.
0.6187.0PtpAffx.65361.1.S1_atAt5g41530hypothetical protein-1e+0At2g20500unknown proteinO.I.H.G.S.X.
0.5884.2PtpAffx.96963.1.S1_atAt5g41530hypothetical protein-6e-9At5g56630PFK7 (PHOSPHOFRUCTOKINASE 7)O.I.H.G.S.X.
0.5582.2PtpAffx.208817.1.S1_atAt5g41530hypothetical protein-9e-26At5g26830threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)O.I.H.G.S.X.
0.5380.5PtpAffx.221437.1.S1_s_atAt5g41530hypothetical protein-3e+0At5g54450unknown proteinO.I.H.G.S.X.
0.5178.9PtpAffx.212649.1.S1_atAt5g41530hypothetical protein-6e-16At2g03800GEK1 (GEKO1)O.I.H.G.S.X.
0.5078.6PtpAffx.19954.2.S1_atAt5g41530hypothetical protein-3e-9At1g13870DRL1 (DEFORMED ROOTS AND LEAVES 1)O.I.H.G.S.X.
0.4774.6PtpAffx.48046.1.S1_atAt5g41530hypothetical protein-3e-11At1g72160SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.4572.3PtpAffx.5423.2.A1_a_atAt5g41530hypothetical protein-1e-13At4g32840PFK6 (PHOSPHOFRUCTOKINASE 6)O.I.H.G.S.X.
0.4268.6PtpAffx.212948.1.S1_atAt5g41530hypothetical protein-1e-1At2g15020unknown proteinO.I.H.G.S.X.
0.4167.7PtpAffx.59718.1.S1_atAt5g41530hypothetical protein-3e-1At3g44960unknown proteinO.I.H.G.S.X.
0.4067.0PtpAffx.6298.3.S1_atAt5g41530hypothetical protein-9e-2At4g00585unknown proteinO.I.H.G.S.X.
0.3762.3PtpAffx.29131.1.S1_a_atAt5g41530hypothetical protein-2e+0At5g07060zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.3255.2PtpAffx.13452.1.S1_atAt5g41530hypothetical protein-2e-6At5g63910FCLY (FARNESYLCYSTEINE LYASE)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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