Co-expression analysis

Gene ID	HgAffx.14040.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g04430: BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) (HF=5e+0)
Module size	30 genes
NF	0.40
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.7	0.92	HgAffx.14040.1.S1_at	CB379482	-	-	5e+0	At5g04430	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.93	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.93	PsAffx.C123000031_at	PsAffx.C123000031	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.94	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.93	PsAffx.C52000084_at	PsAffx.C52000084	-	-	2e+0	At5g22140	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.94	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.94	HgAffx.19601.1.S1_at	CA939579	-	-	4e+0	At5g51845	-	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.94	PsAffx.C34000064_at	PsAffx.C34000064	-	-	2e+0	At5g29560	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.93	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.94	PsAffx.psMA010xD09f_at	PsAffx.psMA010xD09f	-	-	1e+0	At1g07985	Expressed protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.93	HgAffx.11255.1.S1_at	CB935195	-	-	5e+0	At3g09050	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.94	HgAffx.3203.1.A1_at	CK350831	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.95	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.93	HgAffx.18050.1.S1_at	CB238644	-	-	3e+0	At5g42504	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.95	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.93	PsAffx.C217000001_at	PsAffx.C217000001	-	-	6e-1	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.94	PsAffx.C122000010_at	PsAffx.C122000010	-	-	6e-1	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.93	HgAffx.1235.1.A1_at	CK351456	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.94	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.94	HgAffx.14720.1.A1_at	CK350926	-	-	2e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.94	GmaAffx.15790.1.A1_at	CD405768	-	-	2e+0	At1g70790	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.94	HgAffx.18004.1.S1_at	CB279764	-	-	2e+0	At4g13000	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.94	HgAffx.15698.1.S1_at	CB281296	-	-	4e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.94	PsAffx.C3000160_s_at	PsAffx.C3000160	-	-	4e+0	At5g42860	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.94	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.95	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.95	GmaAffx.47834.1.A1_at	AF175392.1	-	-	3e-1	At4g16330	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.94	PsAffx.CL1850Contig1_at	PsAffx.CL1850Contig1	-	-	3e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.94	GmaAffx.70613.1.S1_at	AW277731	-	-	2e-13	At1g11950	transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.5	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.3	97.5	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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