Co-expression analysis

Gene ID	HgAffx.13651.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g37610: voltage-gated anion channel (HF=1e+1)
Module size	6 genes
NF	0.01
%ile	7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.85	HgAffx.13651.1.S1_at	CB374331	-	-	1e+1	At5g37610	voltage-gated anion channel	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.93	HgAffx.8369.1.S1_at	CB380132	-	-	9e-1	At5g67000	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.93	PsAffx.psHB012xG08f_at	PsAffx.psHB012xG08f	-	-	2e-1	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.93	Gma.13975.1.A1_at	CD412131	-	-	3e+0	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.94	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.	Please select
-	1.4	0.93	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	98.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.6	97.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7	96.8	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.1	95.8	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294428	83_2450.2J.R161P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.17734.1.A1_at, orthologous to the query gene, HgAffx.13651.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	Zm.17734.1.A1_at	At5g37610	-	-	2e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.7568.1.A1_at	At5g37610	blue copper protein	-	2e+0	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.18429.1.A1_at	At5g37610	hypothetical protein LOC100274071	-	6e+0	At5g44560	VPS2.2	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.16352.1.A1_at	At5g37610	-	-	1e+0	At2g32340	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.8622.1.A1_at	At5g37610	CBL-interacting serine/threonine-protein kinase 15	-	9e-1	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.19081.1.S1_at	At5g37610	-	-	3e-2	At5g06990	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.9784.1.A1_at	At5g37610	-	-	1e+0	At5g50840	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.4403.1.S1_at	At5g37610	hypothetical protein LOC100279045	-	5e+0	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.4419.1.A1_at	At5g37610	AT-hook protein 1	-	9e-1	At5g54900	ATRBP45A (RNA-binding protein 45A)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.13944.6.S1_a_at	At5g37610	glycine-rich RNA-binding protein 8	-	9e-10	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.901.1.A1_at	At5g37610	-	-	1e+0	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.502.1.S1_at	At5g37610	GDP-mannose 4,6 dehydratase 2	-	5e-14	At5g66280	GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.4497.1.A1_at	At5g37610	hypothetical protein LOC100193897	-	7e-1	At2g20940	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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