CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HgAffx.13651.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g37610: voltage-gated anion channel (HF=1e+1)

Module size 6 genes

NF 0.01

%ile 7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.85 HgAffx.13651.1.S1_at CB374331 - - 1e+1 At5g37610 voltage-gated anion channel O.I. H.G. S.X.
0.27 35.7 0.93 HgAffx.8369.1.S1_at CB380132 - - 9e-1 At5g67000 DNA binding / transcription factor O.I. H.G. S.X.
0.24 30.9 0.93 PsAffx.psHB012xG08f_at PsAffx.psHB012xG08f - - 2e-1 At1g53580 GLY3 (GLYOXALASE II 3) O.I. H.G. S.X.
0.07 10.2 0.93 Gma.13975.1.A1_at CD412131 - - 3e+0 At2g45640 SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) O.I. H.G. S.X.
0.03 5.8 0.94 GmaAffx.14280.1.S1_at BM095066 - - 1e-8 At1g22710 SUC2 (SUCROSE-PROTON SYMPORTER 2) O.I. H.G. S.X.
- 1.4 0.93 HgAffx.17965.1.S1_at CB278425 - - 2e+0 At2g23340 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 98.0 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.6 97.7 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7 96.8 GSM294431 86_2456.2J.R220P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM294423 79_2455.2J.R220L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM201099 Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
3.1 95.8 GSM294427 82_2447.2J.R119L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM294428 83_2450.2J.R161P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the rice gene, Os04g0129200, orthologous to the query gene, HgAffx.13651.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os04g0129200 At5g37610 - 3'-5' exonuclease domain containing protein 1e-1 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.77 93.1 Os01g0748000 At5g37610 - Dynamin family protein 4e-29 At4g32850 nPAP (NUCLEAR POLY(A) POLYMERASE) O.I. H.G. S.X.
0.69 87.9 Os12g0124700 At5g37610 - CDC45-like protein family protein 9e-11 At3g25100 CDC45 (cell division cycle 45) O.I. H.G. S.X.
0.65 83.8 Os04g0177300 At5g37610 - SNF2-related domain containing protein 8e-9 At5g43530 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein O.I. H.G. S.X.
0.61 81.2 Os07g0406800 At5g37610 - Eukaryotic-type DNA primase, large subunit familyprotein 2e-5 At1g67320 DNA primase, large subunit family O.I. H.G. S.X.
0.58 77.0 Os02g0770700 At5g37610 - Peptidase C50, separase family protein 2e+0 At4g22970 AESP (ARABIDOPSIS HOMOLOG OF SEPARASE) O.I. H.G. S.X.
0.57 77.0 Os12g0547500 At5g37610 - Kinesin, motor region domain containing protein 2e-31 At2g47500 ATP binding / microtubule motor O.I. H.G. S.X.
0.56 76.3 Os12g0621700 At5g37610 - Hypothetical protein 9e-5 At3g54750 unknown protein O.I. H.G. S.X.
0.55 73.7 Os02g0168300 At5g37610 - Hypothetical protein 2e-10 At1g06660 unknown protein O.I. H.G. S.X.
0.50 68.0 Os05g0420900 At5g37610 - Conserved hypothetical protein 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) O.I. H.G. S.X.
0.49 64.4 Os04g0261400 At5g37610 - Conserved hypothetical protein 9e-2 At1g62870 unknown protein O.I. H.G. S.X.
0.48 63.7 Os01g0896300 At5g37610 - Conserved hypothetical protein 8e-1 At2g04025 unknown protein O.I. H.G. S.X.
0.43 55.4 Os03g0704400 At5g37610 - Protein kinase domain containing protein 1e-16 At1g77720 protein kinase family protein O.I. H.G. S.X.
0.40 51.1 Os03g0710100 At5g37610 - Protein kinase domain containing protein 2e-3 At1g13330 - O.I. H.G. S.X.
0.38 46.9 Os11g0552600 At5g37610 - Hypothetical protein 8e-16 At1g59540 ZCF125 O.I. H.G. S.X.
0.32 36.3 Os01g0635400 At5g37610 - contains InterPro domain(s): IPR001680, IPR011046 1e-2 At1g80670 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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