Co-expression analysis

Gene ID	HgAffx.13651.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g37610: voltage-gated anion channel (HF=1e+1)
Module size	6 genes
NF	0.01
%ile	7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.85	HgAffx.13651.1.S1_at	CB374331	-	-	1e+1	At5g37610	voltage-gated anion channel	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.93	HgAffx.8369.1.S1_at	CB380132	-	-	9e-1	At5g67000	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.93	PsAffx.psHB012xG08f_at	PsAffx.psHB012xG08f	-	-	2e-1	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.93	Gma.13975.1.A1_at	CD412131	-	-	3e+0	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.94	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.	Please select
-	1.4	0.93	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	98.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.6	97.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7	96.8	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.1	95.8	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294428	83_2450.2J.R161P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig20676_at, orthologous to the query gene, HgAffx.13651.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	Contig20676_at	At5g37610	-	-	2e+0	At1g66650	seven in absentia (SINA) protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig7254_s_at	At5g37610	-	-	6e+0	At2g17880	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig434_s_at	At5g37610	-	-	4e-22	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.25	28.9	EBpi07_SQ002_J15_at	At5g37610	-	-	5e+0	At2g03060	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig15158_at	At5g37610	-	-	1e-11	At5g65090	BST1 (BRISTLED 1)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig6339_s_at	At5g37610	-	-	2e+0	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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