CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HgAffx.13651.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g37610: voltage-gated anion channel (HF=1e+1)

Module size 6 genes

NF 0.01

%ile 7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.85 HgAffx.13651.1.S1_at CB374331 - - 1e+1 At5g37610 voltage-gated anion channel O.I. H.G. S.X.
0.27 35.7 0.93 HgAffx.8369.1.S1_at CB380132 - - 9e-1 At5g67000 DNA binding / transcription factor O.I. H.G. S.X.
0.24 30.9 0.93 PsAffx.psHB012xG08f_at PsAffx.psHB012xG08f - - 2e-1 At1g53580 GLY3 (GLYOXALASE II 3) O.I. H.G. S.X.
0.07 10.2 0.93 Gma.13975.1.A1_at CD412131 - - 3e+0 At2g45640 SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) O.I. H.G. S.X.
0.03 5.8 0.94 GmaAffx.14280.1.S1_at BM095066 - - 1e-8 At1g22710 SUC2 (SUCROSE-PROTON SYMPORTER 2) O.I. H.G. S.X.
- 1.4 0.93 HgAffx.17965.1.S1_at CB278425 - - 2e+0 At2g23340 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 98.0 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.6 97.7 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7 96.8 GSM294431 86_2456.2J.R220P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM294423 79_2455.2J.R220L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM201099 Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
3.1 95.8 GSM294427 82_2447.2J.R119L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM294428 83_2450.2J.R161P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g37610, orthologous to the query gene, HgAffx.13651.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g37610 833739 voltage-gated anion channel F:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane, endomembrane system;PMF O.I. H.G. S.X.
0.36 43.6 At4g21370 827889 S-locus protein kinase, putative The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1. O.I. H.G. S.X.
0.25 22.6 At5g50190 835084 - Unknown gene O.I. H.G. S.X.
0.22 17.5 At1g54230 841864 DNA binding F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;PF O.I. H.G. S.X.
0.13 5.8 At2g05890 815141 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.08 2.3 At2g02830 3768540 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.03 0.6 At5g28790 832995 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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