Co-expression analysis

Gene ID	HgAffx.12671.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g11010: pre-mRNA cleavage complex-related (HF=3e+0)
Module size	6 genes
NF	0.03
%ile	14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.73	HgAffx.12671.1.S1_at	CB375363	-	-	3e+0	At5g11010	pre-mRNA cleavage complex-related	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.90	GmaAffx.74485.1.A1_at	BU550283	-	-	7e-2	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.80	PsAffx.C99000057_at	PsAffx.C99000057	-	-	2e+0	At5g04490	VTE5 (vitamin E pathway gene5)	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.91	HgAffx.14040.1.S1_at	CB379482	-	-	5e+0	At5g04430	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.92	PsAffx.C52000084_at	PsAffx.C52000084	-	-	2e+0	At5g22140	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.91	HgAffx.23814.1.S1_at	CK349032	-	-	1e+0	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	99.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.2	96.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, Ta.13448.2.A1_at, orthologous to the query gene, HgAffx.12671.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	Ta.13448.2.A1_at	At5g11010	-	-	3e+0	At3g11180	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.27192.1.S1_s_at	At5g11010	protein H2A	-	3e-9	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.10240.1.S1_x_at	At5g11010	-	-	4e-42	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.17892.1.S1_at	At5g11010	-	-	8e-4	At3g54360	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.9747.1.S1_x_at	At5g11010	-	-	3e-3	At4g25180	DNA binding / DNA-directed RNA polymerase	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.9747.1.S1_a_at	At5g11010	-	-	3e-3	At4g25180	DNA binding / DNA-directed RNA polymerase	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.8336.1.S1_at	At5g11010	-	-	8e+0	At5g06270	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.96.1.S1_at	At5g11010	-	-	9e-1	At5g55870	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.29624.1.S1_at	At5g11010	-	-	5e-42	At1g79570	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.5469.2.S1_at	At5g11010	-	-	4e+0	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.3345.2.S1_at	At5g11010	-	-	1e+0	At2g06850	EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.1170.1.S1_s_at	At5g11010	-	-	6e-11	At3g01910	SOX (SULFITE OXIDASE)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.5602.3.S1_a_at	At5g11010	-	-	2e-13	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.3365.1.S1_at	At5g11010	-	-	6e-1	At4g22220	ISU1	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6895.1.S1_at	At5g11010	-	-	1e-15	At4g28610	PHR1 (PHOSPHATE STARVATION RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.5602.1.A1_at	At5g11010	-	-	5e+0	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.23402.2.S1_a_at	At5g11010	-	-	1e+0	At5g38895	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.4372.1.A1_at	At5g11010	-	-	7e+0	At5g05100	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.28418.1.S1_x_at	At5g11010	-	-	6e+0	At1g21340	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.1170.1.S1_at	At5g11010	-	-	6e-11	At3g01910	SOX (SULFITE OXIDASE)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.9486.1.S1_a_at	At5g11010	-	-	4e-13	At2g18750	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.129875.1.S1_at	At5g11010	-	-	2e+0	At4g22740	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.10534.1.S1_a_at	At5g11010	-	-	4e-1	At4g11485	LCR11 (Low-molecular-weight cysteine-rich 11)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.8525.2.S1_a_at	At5g11010	-	-	1e+0	At3g57840	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.8749.1.S1_a_at	At5g11010	-	-	5e-14	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.13695.1.S1_at	At5g11010	-	-	1e-25	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.15921.1.S1_at	At5g11010	-	-	8e+0	At4g16030	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.105585.1.S1_at	At5g11010	-	-	1e-5	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.6202.1.S1_at	At5g11010	-	-	7e-6	At3g04040	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.28276.1.S1_at	At5g11010	-	-	2e+0	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.25709.1.A1_at	At5g11010	-	-	6e+0	At5g47120	ATBI1 (BAX INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.9621.1.A1_at	At5g11010	-	-	5e-9	At2g01220	nucleotidyltransferase	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.8023.1.S1_at	At5g11010	-	-	4e-3	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.12321.1.S1_at	At5g11010	-	-	6e-2	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.28828.1.S1_at	At5g11010	-	-	1e-5	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage