Co-expression analysis

Gene ID	HgAffx.12671.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g11010: pre-mRNA cleavage complex-related (HF=3e+0)
Module size	6 genes
NF	0.03
%ile	14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.73	HgAffx.12671.1.S1_at	CB375363	-	-	3e+0	At5g11010	pre-mRNA cleavage complex-related	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.90	GmaAffx.74485.1.A1_at	BU550283	-	-	7e-2	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.80	PsAffx.C99000057_at	PsAffx.C99000057	-	-	2e+0	At5g04490	VTE5 (vitamin E pathway gene5)	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.91	HgAffx.14040.1.S1_at	CB379482	-	-	5e+0	At5g04430	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.92	PsAffx.C52000084_at	PsAffx.C52000084	-	-	2e+0	At5g22140	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.91	HgAffx.23814.1.S1_at	CK349032	-	-	1e+0	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	99.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.2	96.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.110023.1.A1_at, orthologous to the query gene, HgAffx.12671.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	PtpAffx.110023.1.A1_at	At5g11010	-	-	7e-2	At1g70190	ribosomal protein L12 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.48308.1.A1_at	At5g11010	-	-	1e+0	At1g78220	GRF13	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.216641.1.S1_at	At5g11010	hypothetical protein	-	5e-1	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.219232.1.S1_at	At5g11010	hypothetical protein	-	5e+0	At3g21465	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.208071.1.S1_at	At5g11010	hypothetical protein	-	3e+0	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.205589.1.S1_at	At5g11010	hypothetical protein	-	6e-3	At3g22970	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.223886.1.S1_at	At5g11010	hypothetical protein	-	4e+0	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.225386.1.S1_x_at	At5g11010	-	-	4e-9	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.220544.1.S1_at	At5g11010	hypothetical protein	-	9e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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