CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HZ49F08r_at

Gene name
Homology with Arabidopsis Similar to At4g00893: - (HF=4e+0)

Module size 15 genes

NF 0.33

%ile 43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.82 HZ49F08r_at HZ49F08r - - 4e+0 At4g00893 - O.I. H.G. S.X.
0.60 77.3 0.86 HY10B09u_s_at HY10B09u - - 3e+0 At4g00893 - O.I. H.G. S.X.
0.54 70.3 0.88 EBro02_SQ006_O21_s_at EBro02_SQ006_O21 - - 1e-2 At4g10810 unknown protein O.I. H.G. S.X.
0.40 53.1 0.91 Contig6587_s_at Contig6587 - - 1e-4 At3g52470 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.33 42.6 0.87 Contig142_at Contig142 - - 1e-24 At5g59690 histone H4 O.I. H.G. S.X.
0.32 40.3 0.87 Contig24888_at Contig24888 - - 1e+0 At2g26940 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.31 38.6 0.90 Contig17047_at Contig17047 - - 2e+0 At3g13440 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.30 37.0 0.90 Contig18444_at Contig18444 - - 2e+0 At1g08650 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) O.I. H.G. S.X.
0.30 37.0 0.90 Contig2750_s_at Contig2750 - - 4e-15 At2g33150 PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) O.I. H.G. S.X.
0.29 35.5 0.90 HV08O06r_at HV08O06r - - 1e+0 At2g23945 chloroplast nucleoid DNA-binding protein-related O.I. H.G. S.X.
0.29 35.5 0.93 rbags16i08_s_at rbags16i08 - - 8e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) O.I. H.G. S.X.
0.25 28.9 0.90 Contig18440_at Contig18440 - - 2e+0 At3g56590 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.21 22.6 0.87 Contig10728_at Contig10728 - - 4e+0 At5g04520 unknown protein O.I. H.G. S.X.
0.16 15.3 0.86 rbags1c09_at rbags1c09 - - 5e+0 At2g04420 nucleic acid binding O.I. H.G. S.X.
0.14 12.9 0.87 Contig13931_at Contig13931 - - 2e+0 At5g47080 CKB1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 96.2 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9 95.8 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM372951 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8 95.7 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM372952 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2 94.3 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM372949 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0 93.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
2.8 93.1 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage