CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HZ40E11r_at

Gene name
Homology with Arabidopsis Similar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=9e-1)

Module size 17 genes

NF 0.16

%ile 19.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.91 HZ40E11r_at HZ40E11r - - 9e-1 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) O.I. H.G. S.X.
0.33 42.6 0.93 Contig9551_at Contig9551 - - 1e-5 At5g08170 EMB1873 (EMBRYO DEFECTIVE 1873) O.I. H.G. S.X.
0.33 42.6 0.95 Contig9080_s_at Contig9080 - - 5e-14 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.21 22.6 0.95 Contig5749_at Contig5749 - - 6e-16 At2g25310 carbohydrate binding O.I. H.G. S.X.
0.20 21.1 0.94 Contig22133_at Contig22133 - - 6e+0 At5g48760 60S ribosomal protein L13A (RPL13aD) O.I. H.G. S.X.
0.19 19.6 0.92 Contig23222_at Contig23222 - - 4e-3 At3g52980 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.18 18.2 0.93 Contig8592_at Contig8592 - - 7e-1 At3g17090 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.17 16.9 0.93 HV_CEb0011I04r2_at HV_CEb0011I04r2 - - 4e+0 At1g54775 - O.I. H.G. S.X.
0.16 15.3 0.96 Contig4715_at Contig4715 - - 1e+0 At4g10810 unknown protein O.I. H.G. S.X.
0.14 12.9 0.94 Contig10617_at Contig10617 - - 6e-2 At5g66490 unknown protein O.I. H.G. S.X.
0.14 12.9 0.95 Contig2510_at Contig2510 - - 6e-4 At3g05550 hypoxia-responsive family protein O.I. H.G. S.X.
0.13 11.6 0.95 Contig12070_at Contig12070 - - 1e-5 At1g68850 peroxidase, putative O.I. H.G. S.X.
0.13 11.6 0.96 Contig8943_at Contig8943 - - 1e-6 At1g75990 26S proteasome regulatory subunit S3, putative (RPN3) O.I. H.G. S.X.
0.12 10.4 0.95 rbags1e22_s_at rbags1e22 - - 3e-1 At3g56360 unknown protein O.I. H.G. S.X.
0.11 9.4 0.94 Contig15096_s_at Contig15096 - - 2e-1 At5g51720 unknown protein O.I. H.G. S.X.
0.07 5.8 0.92 Contig16221_at Contig16221 - - 1e-1 At1g02000 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) O.I. H.G. S.X.
0.05 4.1 0.92 HI05D03u_at HI05D03u - - 5e+0 At4g10250 ATHSP22.0 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 96.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.2 94.3 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
2.8 93.1 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
2.7 92.7 GSM372939 genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7 92.7 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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