Co-expression analysis

Gene ID	HY09E16u_s_at
Gene name
Homology with Arabidopsis	Similar to At5g02680: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding (HF=4e+0)
Module size	6 genes
NF	0.36
%ile	48.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.96	HY09E16u_s_at	HY09E16u	-	-	4e+0	At5g02680	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig25363_at	Contig25363	cytokinin dehydrogenase 2	-	3e-5	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig6799_at	Contig6799	cinnamoyl CoA reductase	-	8e-13	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig7966_at	Contig7966	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig7904_at	Contig7904	-	-	2e-4	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7192.1.S1_at, orthologous to the query gene, HY09E16u_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	Gma.7192.1.S1_at	At5g02680	Peroxisomal 3-hydroxyisobutyryl-coenzyme A hydrolase	-	7e-26	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.32696.1.S1_s_at	At5g02680	-	-	5e-3	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.5259.1.S1_at	At5g02680	-	-	6e-9	At4g25070	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.48596.1.S1_at	At5g02680	-	-	3e-2	At5g05760	SYP31 (SYNTAXIN OF PLANTS 31)	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.6221.1.S1_at	At5g02680	-	-	2e-22	At1g32130	-	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.11279.1.S1_s_at	At5g02680	-	-	1e-7	At4g24990	ATGP4	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.7156.1.A1_s_at	At5g02680	-	-	2e-5	At4g36860	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.8107.1.A1_at	At5g02680	-	-	5e-37	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	O.I.	H.G.	S.X.	Please select
0.07	10.2	GmaAffx.26697.1.S1_at	At5g02680	-	-	1e+0	At3g27809	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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