CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HY09E16u_s_at

Gene name
Homology with Arabidopsis Similar to At5g02680: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding (HF=4e+0)

Module size 6 genes

NF 0.36

%ile 48.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.9 0.96 HY09E16u_s_at HY09E16u - - 4e+0 At5g02680 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding O.I. H.G. S.X.
0.67 84.7 0.96 Contig25363_at Contig25363 cytokinin dehydrogenase 2 - 3e-5 At3g63440 CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6) O.I. H.G. S.X.
0.67 84.7 0.96 Contig6799_at Contig6799 cinnamoyl CoA reductase - 8e-13 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) O.I. H.G. S.X.
0.39 50.5 0.95 Contig7966_at Contig7966 - - 4e+0 At2g42830 SHP2 (SHATTERPROOF 2) O.I. H.G. S.X.
0.30 37.0 0.96 Contig7904_at Contig7904 - - 2e-4 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) O.I. H.G. S.X.
0.15 14.1 0.96 Contig3558_s_at Contig3558 - - 2e-15 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.6 98.2 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.7 95.5 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.1 94.1 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g02680, orthologous to the query gene, HY09E16u_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.32 35.7 At5g02680 831842 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding F:aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;MPBO O.I. H.G. S.X.
0.44 57.2 At4g27910 828904 SDG16 (SET DOMAIN PROTEIN 16) F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBA O.I. H.G. S.X.
0.13 5.8 At2g42160 818816 zinc finger (ubiquitin-hydrolase) domain-containing protein F:protein binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MFOPB O.I. H.G. S.X.
0.11 4.1 At1g73350 843670 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;POMF O.I. H.G. S.X.
0.08 2.3 At5g37590 833737 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBFOAP O.I. H.G. S.X.
0.07 1.9 At1g14690 838034 MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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