Co-expression analysis

Gene ID HY09E16u_s_at
Gene name
Homology with ArabidopsisSimilar to At5g02680: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding (HF=4e+0)
Module size 6 genes
NF 0.36
%ile 48.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.96HY09E16u_s_atHY09E16u--4e+0At5g02680ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.6784.70.96Contig25363_atContig25363cytokinin dehydrogenase 2-3e-5At3g63440CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)O.I.H.G.S.X.
0.6784.70.96Contig6799_atContig6799cinnamoyl CoA reductase-8e-13At1g15950CCR1 (CINNAMOYL COA REDUCTASE 1)O.I.H.G.S.X.
0.3950.50.95Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.3037.00.96Contig7904_atContig7904--2e-4At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.1514.10.96Contig3558_s_atContig3558--2e-15At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.795.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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