Co-expression analysis

Gene ID	HY08I14u_s_at
Gene name
Homology with Arabidopsis	Similar to At1g07680: unknown protein (HF=2e+0)
Module size	38 genes
NF	0.27
%ile	34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.94	HY08I14u_s_at	HY08I14u	-	-	2e+0	At1g07680	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	HVSMEc0011A03f_at	HVSMEc0011A03f	-	-	1e-23	Atcg00520	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig10534_s_at	Contig10534	-	-	3e-7	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig23075_at	Contig23075	-	-	8e-84	Atcg00900	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig9660_at	Contig9660	-	-	1e-1	At4g24750	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig1335_at	Contig1335	-	-	6e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	HW08D24u_s_at	HW08D24u	-	-	3e+0	At4g33360	terpene cyclase/mutase-related	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	S0001100033F08F1_s_at	S0001100033F08F1	-	-	3e+0	At4g11240	TOPP7	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig14017_at	Contig14017	-	-	3e-1	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig11095_at	Contig11095	-	-	2e-4	At3g19895	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig9807_at	Contig9807	-	-	1e-22	At5g15400	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig20475_at	Contig20475	-	-	2e+0	At2g23067	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig9355_s_at	Contig9355	-	-	7e+0	At5g55510	P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig16840_at	Contig16840	-	-	4e-1	At5g22545	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig20359_at	Contig20359	-	-	2e+0	At4g26110	NAP1	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig2963_at	Contig2963	-	-	4e-6	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig16123_at	Contig16123	-	-	2e-1	At5g07130	LAC13 (laccase 13)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig13507_at	Contig13507	-	-	2e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig3741_s_at	Contig3741	-	-	1e-6	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig7044_at	Contig7044	-	-	4e-3	At5g42090	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig6475_at	Contig6475	-	-	3e-10	At3g01650	RGLG1 (RING domain Ligase1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	HVSMEc0012C14r2_at	HVSMEc0012C14r2	-	-	3e-1	At5g46920	intron maturase, type II family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig16156_s_at	Contig16156	-	-	1e-4	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig6579_at	Contig6579	-	-	8e-9	At4g21110	G10 family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig2505_at	Contig2505	-	-	9e-5	At2g36930	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig5311_at	Contig5311	O-methyltransferase	-	7e-1	At1g62900	O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig19553_at	Contig19553	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig9041_s_at	Contig9041	-	-	6e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig5540_at	Contig5540	-	-	1e-52	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig17590_at	Contig17590	-	-	7e-9	At5g28050	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	HVSMEf0005F10r2_at	HVSMEf0005F10r2	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig19484_at	Contig19484	-	-	3e-2	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig13413_at	Contig13413	-	-	1e+0	At3g46210	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.1	94.1	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.5	91.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.4	91.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage