CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HY08C12u_at

Gene name
Homology with Arabidopsis Similar to At5g23640: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.69

%ile 90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.93 HY08C12u_at HY08C12u - - 3e+0 At5g23640 unknown protein O.I. H.G. S.X.
0.80 92.5 0.93 HX03C24u_at HX03C24u - - 1e-2 At5g47500 pectinesterase family protein O.I. H.G. S.X.
0.77 90.8 0.92 Contig9625_at Contig9625 - - 1e-14 At2g45440 DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE) O.I. H.G. S.X.
0.60 77.3 0.94 Contig18868_at Contig18868 - - 6e-1 At4g01023 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.53 69.7 0.93 Contig21697_at Contig21697 - - 1e+0 At4g35980 unknown protein O.I. H.G. S.X.
0.50 66.9 0.94 Contig20310_at Contig20310 - - 3e+0 At5g56370 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 97.2 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.2 94.3 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.0 93.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
2.9 93.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.8920.2.S1_a_at, orthologous to the query gene, HY08C12u_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 Zm.8920.2.S1_a_at At5g23640 - - 8e-1 At5g15220 ribosomal protein L27 family protein O.I. H.G. S.X.
0.76 91.1 Zm.14934.1.A1_at At5g23640 CHCH domain containing protein - 1e+0 At3g09032 unknown protein O.I. H.G. S.X.
0.64 81.7 Zm.1585.1.S1_at At5g23640 profilin 2 - 6e-16 At4g29340 PRF4 (PROFILIN 4) O.I. H.G. S.X.
0.58 75.1 Zm.4017.2.S1_a_at At5g23640 ubiquitin-conjugating enzyme E2 I /// ubiquitin-conjugating enzyme E2 I - 1e-19 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.50 65.7 Zm.7143.1.S1_at At5g23640 myc transcription factor7 - 1e+0 At5g46760 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.46 58.4 Zm.7889.1.A1_at At5g23640 Somatic embryogenesis receptor-like kinase3 - 7e-30 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) O.I. H.G. S.X.
0.46 58.4 Zm.15848.1.A1_a_at At5g23640 - - 1e-3 At5g07090 40S ribosomal protein S4 (RPS4B) O.I. H.G. S.X.
0.39 45.6 Zm.16821.1.A1_at At5g23640 h/ACA ribonucleoprotein complex subunit 3-like protein - 2e+0 At4g20030 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.39 45.6 Zm.15207.1.A1_at At5g23640 nam1 protein - 4e+0 At5g08760 unknown protein O.I. H.G. S.X.
0.36 41.3 Zm.12394.1.S1_at At5g23640 hypothetical protein LOC100279308 - 2e-8 At2g40550 ETG1 (E2F TARGET GENE 1) O.I. H.G. S.X.
0.31 31.6 Zm.6532.6.A1_at At5g23640 hypothetical protein LOC100272908 /// abscisic stress ripening protein 2 /// abscisic stress ripening protein 2 - 1e-1 At1g62060 unknown protein O.I. H.G. S.X.
0.30 29.8 Zm.9569.1.A1_at At5g23640 polyadenylate-binding protein 2 - 5e-7 At5g65260 polyadenylate-binding protein family protein / PABP family protein O.I. H.G. S.X.
0.28 28.1 Zm.2807.1.A1_at At5g23640 zinc-finger protein 1 - 7e-1 At5g57345 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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