Co-expression analysis

Gene ID	HY08C12u_at
Gene name
Homology with Arabidopsis	Similar to At5g23640: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.69
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.93	HY08C12u_at	HY08C12u	-	-	3e+0	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.93	HX03C24u_at	HX03C24u	-	-	1e-2	At5g47500	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	Contig9625_at	Contig9625	-	-	1e-14	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig18868_at	Contig18868	-	-	6e-1	At4g01023	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.93	Contig21697_at	Contig21697	-	-	1e+0	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1611909_at, orthologous to the query gene, HY08C12u_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.7	1611909_at	At5g23640	-	-	4e+0	At5g36140	CYP716A2	O.I.	H.G.	S.X.	Please select
0.35	48.5	1622823_at	At5g23640	hypothetical LOC100261783	-	5e-3	At2g20230	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1613122_at	At5g23640	hypothetical protein LOC100262719	-	5e-19	At1g23230	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611447_at	At5g23640	hypothetical protein LOC100259643	-	2e-1	At2g47590	PHR2 (photolyase/blue-light receptor 2)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1614739_at	At5g23640	hypothetical protein LOC100260049	-	6e-2	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1609615_at	At5g23640	hypothetical protein LOC100257906	-	4e-11	At5g05000	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1622553_a_at	At5g23640	hypothetical protein LOC100267624	-	1e-34	At5g18190	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1618047_at	At5g23640	hypothetical protein LOC100241851	-	1e-5	At2g41790	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1610811_at	At5g23640	hypothetical protein LOC100258263	-	2e-16	At5g62190	PRH75	O.I.	H.G.	S.X.	Please select
0.26	32.0	1609776_at	At5g23640	hypothetical protein LOC100252635	-	1e-19	At1g73875	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1622361_s_at	At5g23640	similar to cyclase	-	9e-31	At4g35220	cyclase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1619803_at	At5g23640	hypothetical protein LOC100242666	-	2e-2	At4g14930	acid phosphatase survival protein SurE, putative	O.I.	H.G.	S.X.	Please select
0.25	30.5	1619758_s_at	At5g23640	hypothetical protein LOC100254356	-	1e+0	At3g01600	anac044 (Arabidopsis NAC domain containing protein 44)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1614787_at	At5g23640	hypothetical protein LOC100241423	-	1e-18	At2g27900	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1619089_at	At5g23640	hypothetical protein LOC100257546	-	4e-23	At4g00840	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.21	24.0	1620596_at	At5g23640	hypothetical protein LOC100259534	-	5e-174	At5g44340	TUB4	O.I.	H.G.	S.X.	Please select
0.20	22.4	1620167_at	At5g23640	hypothetical protein LOC100247740	-	1e+0	At2g20450	60S ribosomal protein L14 (RPL14A)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1622470_at	At5g23640	hypothetical protein LOC100251821	-	8e-18	At1g06900	catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.18	19.4	1616844_at	At5g23640	hypothetical protein LOC100257380	-	1e-20	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1613820_at	At5g23640	hypothetical protein LOC100264554	-	2e-8	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1608421_at	At5g23640	-	-	3e-1	At5g47090	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1611522_at	At5g23640	hypothetical protein LOC100243992	-	1e-4	At5g09880	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1622847_a_at	At5g23640	hypothetical protein LOC100251447	-	5e-9	At4g18380	F-box family protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	1621306_at	At5g23640	hypothetical protein LOC100266317	-	2e-25	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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