Co-expression analysis

Gene ID	HY08C12u_at
Gene name
Homology with Arabidopsis	Similar to At5g23640: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.69
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.93	HY08C12u_at	HY08C12u	-	-	3e+0	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.93	HX03C24u_at	HX03C24u	-	-	1e-2	At5g47500	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	Contig9625_at	Contig9625	-	-	1e-14	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig18868_at	Contig18868	-	-	6e-1	At4g01023	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.93	Contig21697_at	Contig21697	-	-	1e+0	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.212662.1.S1_at, orthologous to the query gene, HY08C12u_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.212662.1.S1_at	At5g23640	hypothetical protein	-	3e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.201764.1.S1_at	At5g23640	shikimate kinase	-	3e-1	At4g39540	shikimate kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.205732.1.S1_at	At5g23640	hypothetical protein	-	5e-78	Atmg00580	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.222521.1.S1_at	At5g23640	chromatin remodeling complex subunit	-	3e+0	At5g43175	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.54801.2.A1_at	At5g23640	hypothetical protein	-	2e-1	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.52166.1.A1_at	At5g23640	hypothetical protein	-	5e+0	At5g46115	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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