Co-expression analysis

Gene ID HY05A01u_x_at
Gene name
Homology with ArabidopsisSimilar to At1g69620: RPL34 (RIBOSOMAL PROTEIN L34) (HF=1e-7)
Module size 32 genes
NF 0.55
%ile 75.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.95HY05A01u_x_atHY05A01u--1e-7At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.
0.7489.10.97HVSMEc0011O22r2_atHVSMEc0011O22r2--9e-2At3g17500F-box family proteinO.I.H.G.S.X.
0.6985.50.95HA27O10r_s_atHA27O10r--4e+0At1g50430DWF5 (DWARF 5)O.I.H.G.S.X.
0.6985.50.96Contig3602_atContig3602--2e+0At4g22950AGL19 (AGAMOUS-LIKE 19)O.I.H.G.S.X.
0.6581.40.96Contig15482_atContig15482--5e+0At2g07362unknown proteinO.I.H.G.S.X.
0.6380.30.97Contig15503_atContig15503--1e+0At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.6279.10.96HVSMEf0001O09r2_s_atHVSMEf0001O09r2--5e-1At4g15755C2 domain-containing proteinO.I.H.G.S.X.
0.6077.30.97HR01C15u_s_atHR01C15u--4e-12At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
0.6077.30.96Contig2738_s_atContig2738--2e-1At4g27820BGLU9 (BETA GLUCOSIDASE 9)O.I.H.G.S.X.
0.5975.80.97Contig2345_s_atContig2345--3e-1At5g0480040S ribosomal protein S17 (RPS17D)O.I.H.G.S.X.
0.5874.90.97Contig14735_atContig14735--6e-6At1g12470Pep3/Vps18/deep orange family proteinO.I.H.G.S.X.
0.5874.90.97Contig19871_atContig19871--4e+0At4g11060MTSSB (mitochondrially targeted single-stranded DNA binding protein)O.I.H.G.S.X.
0.5674.30.97Contig3675_atContig3675--2e-10At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)O.I.H.G.S.X.
0.5572.00.96EBem09_SQ001_H19_s_atEBem09_SQ001_H19--2e-41At3g2339060S ribosomal protein L36a/L44 (RPL36aA)O.I.H.G.S.X.
0.5470.30.96Contig16064_atContig16064--1e+0Atmg00640-O.I.H.G.S.X.
0.5369.70.97Contig11081_atContig11081--1e-26At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)O.I.H.G.S.X.
0.5369.70.96Contig21274_atContig21274--3e-9At5g07180ERL2 (ERECTA-LIKE 2)O.I.H.G.S.X.
0.5167.50.97Contig3963_atContig3963--7e-39At4g19210ATRLI2O.I.H.G.S.X.
0.5167.50.96Contig2301_atContig2301--4e-32At5g6067060S ribosomal protein L12 (RPL12C)O.I.H.G.S.X.
0.5167.50.97Contig26480_atContig26480--2e+0At1g62070unknown proteinO.I.H.G.S.X.
0.5167.50.96HI05M04r_s_atHI05M04r--1e-23At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.4963.70.96HU14M19u_s_atHU14M19u--3e+0At1g7406060S ribosomal protein L6 (RPL6B)O.I.H.G.S.X.
0.4963.70.97HA03D07u_s_atHA03D07u--1e-1At5g15530BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.4863.20.96Contig10380_x_atContig10380--4e-1At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.4762.20.97Contig25214_atContig25214--1e+0At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.4661.00.97Contig14763_atContig14763--2e-1At2g37510RNA-binding protein, putativeO.I.H.G.S.X.
0.4661.00.96Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.4458.90.97Contig24497_atContig24497--3e+0At5g36910THI2.2 (THIONIN 2.2)O.I.H.G.S.X.
0.4255.20.96Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.
0.4153.90.97Contig26118_s_atContig26118--1e+0At5g36280-O.I.H.G.S.X.
0.4053.10.97EBes01_SQ003_E13_s_atEBes01_SQ003_E13--8e-1At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.4053.10.97Contig20936_atContig20936--3e-5At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.695.3GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.792.7GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.792.7GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.692.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.692.3GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.591.9GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage