Co-expression analysis

Gene ID HY04M24u_s_at
Gene name
Homology with ArabidopsisSimilar to At1g54217: Expressed protein (HF=1e-2)
Module size 14 genes
NF 0.34
%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8795.00.94HY04M24u_s_atHY04M24u--1e-2At1g54217Expressed proteinO.I.H.G.S.X.
0.4356.40.96HZ49P22r_s_atHZ49P22r--9e-1At5g42825unknown proteinO.I.H.G.S.X.
0.4255.20.97HVSMEl0020O13r2_s_atHVSMEl0020O13r2--9e+0At5g17150-O.I.H.G.S.X.
0.3747.90.96HV_CEa0008A14r2_s_atHV_CEa0008A14r2--2e+0At3g46060ATRAB8AO.I.H.G.S.X.
0.3647.10.96Contig376_s_atContig376--5e+0At1g28135unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig22861_atContig22861--7e+0At3g59880unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig3884_atContig3884--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.2935.50.96Contig2669_atContig2669--8e-13At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.2630.40.95Contig6422_atContig6422--3e-1At2g34900IMB1 (IMBIBITION-INDUCIBLE 1)O.I.H.G.S.X.
0.2630.40.97HK06B02r_s_atHK06B02r--1e-5At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.
0.2630.40.96HT07O19u_s_atHT07O19u--2e+0At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.2528.90.96Contig4072_atContig4072--2e+0At2g3161040S ribosomal protein S3 (RPS3A)O.I.H.G.S.X.
0.2528.90.96Contig7570_atContig7570--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.
0.2326.10.95EBem05_SQ001_F02_atEBem05_SQ001_F02--8e+0At5g17240SDG40 (SET DOMAIN GROUP 40)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.399.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.491.4GSM261024ABA-Early-rep1GSE10328ABA experimentLink to GEO
2.390.9GSM261028ABA-Late-rep2GSE10328ABA experimentLink to GEO
2.189.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.089.0GSM398265HS41-1_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.089.0GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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