Co-expression analysis

Gene ID	HY04M24u_s_at
Gene name
Homology with Arabidopsis	Similar to At1g54217: Expressed protein (HF=1e-2)
Module size	14 genes
NF	0.34
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.94	HY04M24u_s_at	HY04M24u	-	-	1e-2	At1g54217	Expressed protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	HZ49P22r_s_at	HZ49P22r	-	-	9e-1	At5g42825	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	HVSMEl0020O13r2_s_at	HVSMEl0020O13r2	-	-	9e+0	At5g17150	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	HV_CEa0008A14r2_s_at	HV_CEa0008A14r2	-	-	2e+0	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig376_s_at	Contig376	-	-	5e+0	At1g28135	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig3884_at	Contig3884	-	-	1e+0	At1g69880	ATH8 (thioredoxin H-type 8)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig2669_at	Contig2669	-	-	8e-13	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig6422_at	Contig6422	-	-	3e-1	At2g34900	IMB1 (IMBIBITION-INDUCIBLE 1)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.97	HK06B02r_s_at	HK06B02r	-	-	1e-5	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	HT07O19u_s_at	HT07O19u	-	-	2e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig7570_at	Contig7570	-	-	1e-7	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	EBem05_SQ001_F02_at	EBem05_SQ001_F02	-	-	8e+0	At5g17240	SDG40 (SET DOMAIN GROUP 40)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.3	90.9	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
2.1	89.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.0	89.0	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.0	89.0	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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