Co-expression analysis

Gene ID HY04C04u_at
Gene name
Homology with ArabidopsisSimilar to At1g09490: cinnamyl-alcohol dehydrogenase family / CAD family (HF=7e-1)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.90HY04C04u_atHY04C04u--7e-1At1g09490cinnamyl-alcohol dehydrogenase family / CAD familyO.I.H.G.S.X.
0.8092.50.90HW06C04u_x_atHW06C04u--7e+0At3g05980unknown proteinO.I.H.G.S.X.
0.7187.10.89Contig14732_atContig14732--2e+0At2g46330AGP16 (ARABINOGALACTAN PROTEIN 16)O.I.H.G.S.X.
0.5369.70.90HW09H11u_atHW09H11u--2e-1At1g17510unknown proteinO.I.H.G.S.X.
0.5066.90.89Contig4579_s_atContig4579--2e-9At5g21150PAZ domain-containing protein / piwi domain-containing proteinO.I.H.G.S.X.
0.2021.10.90HT12H07u_x_atHT12H07u--8e+0At5g64552CPuORF22 (Conserved peptide upstream open reading frame 22)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.199.4GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.299.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.199.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.397.4GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.196.2GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.595.1GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.194.1GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.093.8GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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