Co-expression analysis

Gene ID	HY03I16T_at
Gene name
Homology with Arabidopsis	Similar to At5g20100: unknown protein (HF=4e+0)
Module size	13 genes
NF	0.66
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	87.4	0.93	HY03I16T_at	HY03I16T	-	-	4e+0	At5g20100	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.93	Contig8947_at	Contig8947	-	-	4e-2	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.93	Contig1175_s_at	Contig1175	-	-	2e-21	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.94	Contig1790_at	Contig1790	-	-	2e+1	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig21007_at	Contig21007	-	-	1e+0	At2g27520	F-box family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig5551_at	Contig5551	-	-	1e-17	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.95	Contig7380_at	Contig7380	-	-	2e-1	At3g01513	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.92	Contig10576_at	Contig10576	-	-	1e-21	At4g33080	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig14708_at	Contig14708	-	-	6e-4	At2g21960	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig7800_at	Contig7800	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig10910_at	Contig10910	-	-	3e+0	At4g36430	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Y10834_at	Y10834	-	-	2e-1	At4g12050	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig7078_s_at	Contig7078	-	-	2e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	99.5	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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