Co-expression analysis

Gene ID	HY03E10u_s_at
Gene name
Homology with Arabidopsis	Similar to At5g63060: transporter (HF=1e+1)
Module size	6 genes
NF	0.72
%ile	92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig9290_at	Contig9290	-	-	5e-15	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
11.0	99.2	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
8.7	98.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.9	98.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.9	97.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the maize gene, Zm.10157.1.A1_at, orthologous to the query gene, HY03E10u_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	Zm.10157.1.A1_at	At5g63060	-	-	5e+0	At3g47680	DNA binding	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.2904.1.S1_at	At5g63060	hypothetical protein LOC100216828	-	2e-5	At2g27590	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	ZmAffx.437.1.S1_at	At5g63060	Hypothetical protein LOC100193309	-	3e+0	At2g26130	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	ZmAffx.549.1.S1_at	At5g63060	-	-	3e+0	At1g22067	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.9880.2.S1_at	At5g63060	-	-	1e+0	At5g57310	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	ZmAffx.1152.1.A1_at	At5g63060	-	-	3e+0	At2g14935	LCR40 (Low-molecular-weight cysteine-rich 40)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.4141.1.A1_at	At5g63060	hypothetical protein LOC100193590	-	7e-6	At3g17980	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	ZmAffx.902.1.S1_at	At5g63060	hypothetical protein LOC100191467	-	3e+0	At4g16640	matrix metalloproteinase, putative	O.I.	H.G.	S.X.	Please select
0.42	51.3	ZmAffx.736.1.A1_at	At5g63060	-	-	2e-1	At1g36390	co-chaperone grpE family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.4550.1.A1_at	At5g63060	rac GTPase activating protein	-	2e-6	At3g11490	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.8535.1.A1_at	At5g63060	senescence-associated protein	-	6e-1	At4g25330	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.3851.3.A1_a_at	At5g63060	-	-	5e+0	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select
0.36	41.3	ZmAffx.830.1.S1_at	At5g63060	-	-	6e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.8772.1.A1_at	At5g63060	hypothetical protein LOC100192757	-	2e-38	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	O.I.	H.G.	S.X.	Please select
0.35	38.9	ZmAffx.455.1.A1_at	At5g63060	hypothetical protein LOC100194007	-	3e+0	At1g44085	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.2205.1.A1_at	At5g63060	hypothetical protein LOC100193198	-	1e+0	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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