Co-expression analysis

Gene ID	HY03E10u_s_at
Gene name
Homology with Arabidopsis	Similar to At5g63060: transporter (HF=1e+1)
Module size	6 genes
NF	0.72
%ile	92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig9290_at	Contig9290	-	-	5e-15	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
11.0	99.2	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
8.7	98.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.9	98.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.9	97.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.31910.1.S1_at, orthologous to the query gene, HY03E10u_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	TaAffx.31910.1.S1_at	At5g63060	-	-	4e+0	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.14018.3.S1_x_at	At5g63060	-	-	2e-2	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.106823.1.S1_x_at	At5g63060	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.16574.1.S1_at	At5g63060	-	-	4e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.119843.1.S1_at	At5g63060	-	-	2e-1	At5g36150	ATPEN3 (putative pentacyclic triterpene synthase 3)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.22925.1.S1_at	At5g63060	-	-	1e+0	At1g58684	40S ribosomal protein S2, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.106823.1.S1_at	At5g63060	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.27191.1.S1_at	At5g63060	-	-	3e-9	At1g48605	ATHAL3B	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.112441.2.S1_at	At5g63060	-	-	1e+0	At1g42960	-	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.12644.1.S1_at	At5g63060	-	-	4e-1	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.11	12.4	TaAffx.9611.1.S1_at	At5g63060	-	-	1e+0	At3g11110	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	TaAffx.25411.1.S1_at	At5g63060	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage