Co-expression analysis

Gene ID	HY03E10u_s_at
Gene name
Homology with Arabidopsis	Similar to At5g63060: transporter (HF=1e+1)
Module size	6 genes
NF	0.72
%ile	92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig9290_at	Contig9290	-	-	5e-15	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
11.0	99.2	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
8.7	98.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.9	98.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.9	97.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.161836.2.A1_at, orthologous to the query gene, HY03E10u_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	PtpAffx.161836.2.A1_at	At5g63060	-	-	6e+0	At5g34828	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.194.1.S1_at	At5g63060	hypothetical protein	-	1e-21	At1g29370	kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.41998.1.A1_at	At5g63060	hypothetical protein	-	1e+0	At3g42860	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.5794.1.A1_at	At5g63060	-	-	2e+0	At4g13380	MEE56 (maternal effect embryo arrest 56)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.4008.1.S1_at	At5g63060	hypothetical protein	-	1e+0	At5g51040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.205511.1.S1_s_at	At5g63060	hypothetical protein	-	7e-1	At2g03870	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.7620.1.S1_at	At5g63060	hypothetical protein	-	6e+0	Atmg01400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.98055.1.S1_at	At5g63060	-	-	1e+0	At2g46130	WRKY43	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.1315.2.S1_a_at	At5g63060	hypothetical protein	-	6e-37	At5g07660	structural maintenance of chromosomes (SMC) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.7706.1.S1_at	At5g63060	-	-	4e+0	At2g28040	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.5519.1.A1_at	At5g63060	hypothetical protein	-	2e-16	At2g01680	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.13710.1.S1_at	At5g63060	-	-	3e-5	At4g25880	APUM6 (Arabidopsis Pumilio 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.3456.1.S1_at	At5g63060	hypothetical protein	-	7e-6	At1g67310	calmodulin binding / transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.41361.1.A1_at	At5g63060	hypothetical protein	-	4e-1	At5g24150	SQP1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.8077.1.S1_at	At5g63060	hypothetical protein	-	4e-18	At5g64360	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.77740.1.S1_at	At5g63060	hypothetical protein	-	1e-4	At1g55915	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.85691.1.S1_s_at	At5g63060	ebs-bah-phd domain-containing protein	-	6e-25	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.8138.1.S1_at	At5g63060	hypothetical protein	-	3e-5	At2g25320	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.35315.1.S1_at	At5g63060	hypothetical protein	-	1e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage