Co-expression analysis

Gene ID	HY02C22u_x_at
Gene name
Homology with Arabidopsis	Similar to At5g11870: - (HF=4e+0)
Module size	16 genes
NF	0.17
%ile	21.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.86	HY02C22u_x_at	HY02C22u	-	-	4e+0	At5g11870	-	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.85	Contig12442_at	Contig12442	-	-	3e+0	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	M58754_s_at	M58754	acyl carrier protein III precursor	-	4e-1	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig16502_at	Contig16502	-	-	4e-1	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig2783_s_at	Contig2783	-	-	5e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	EBem09_SQ001_L06_s_at	EBem09_SQ001_L06	-	-	5e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig2985_s_at	Contig2985	-	-	9e-43	At5g13630	GUN5 (GENOMES UNCOUPLED 5)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.93	HF17H18r_s_at	HF17H18r	-	-	3e+0	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	HY01F01u_s_at	HY01F01u	-	-	6e+0	At5g47229	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.90	M58754_at	M58754	-	-	4e-1	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	HVSMEb0006M02r2_s_at	HVSMEb0006M02r2	-	-	6e-1	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig21140_at	Contig21140	-	-	1e-7	At4g27300	S-locus protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.93	Contig1446_s_at	Contig1446	-	-	3e-3	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig4345_at	Contig4345	-	-	1e+0	At2g41360	-	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	Contig12374_at	Contig12374	-	-	5e-1	At1g48240	ATNPSN12	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.7	96.9	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.4	91.4	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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