Co-expression analysis

Gene ID	HW06C04u_x_at
Gene name
Homology with Arabidopsis	Similar to At3g05980: unknown protein (HF=7e+0)
Module size	6 genes
NF	0.47
%ile	65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	HW06C04u_x_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig4579_s_at	Contig4579	-	-	2e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.90	HY04C04u_at	HY04C04u	-	-	7e-1	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.90	HW09H11u_at	HW09H11u	-	-	2e-1	At1g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.90	HY09E16u_at	HY09E16u	-	-	4e+0	At5g02680	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.90	HT12H07u_x_at	HT12H07u	-	-	8e+0	At5g64552	CPuORF22 (Conserved peptide upstream open reading frame 22)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.4	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.3	99.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.3	99.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.5	97.6	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.1	96.2	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.6	95.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8488.1.S1_a_at, orthologous to the query gene, HW06C04u_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	92.7	Ta.8488.1.S1_a_at	At3g05980	-	-	4e+0	At4g12040	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.4648.2.S1_at	At3g05980	-	-	3e-1	At1g72690	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.9	Ta.8631.1.S1_at	At3g05980	-	-	8e-28	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.1806.2.S1_at	At3g05980	-	-	4e+0	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.1806.1.S1_at	At3g05980	-	-	9e-11	At4g32760	protein transporter	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.4648.2.S1_x_at	At3g05980	-	-	3e-1	At1g72690	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.20520.1.S1_at	At3g05980	-	-	3e-3	At3g62970	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.23.1.S1_at	At3g05980	Voltage dependent anion channel (VDAC)	-	6e-4	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.16713.2.S1_at	At3g05980	-	-	4e+0	At2g37920	emb1513 (embryo defective 1513)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.1536.1.S1_at	At3g05980	-	-	9e-4	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.12738.1.S1_at	At3g05980	-	-	1e-14	At3g57890	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.10193.2.S1_a_at	At3g05980	-	-	4e-22	At4g35830	aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.20520.2.S1_a_at	At3g05980	-	-	1e+0	At3g61080	fructosamine kinase family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.32988.1.S1_at	At3g05980	-	-	1e-2	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.1806.1.S1_a_at	At3g05980	-	-	9e-11	At4g32760	protein transporter	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.5022.1.A1_x_at	At3g05980	-	-	8e-2	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.5022.1.A1_at	At3g05980	-	-	8e-2	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.2328.1.S1_at	At3g05980	-	-	7e+0	At3g52730	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.2285.1.S1_x_at	At3g05980	-	-	6e+0	At5g55010	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.13767.1.S1_at	At3g05980	Fasciclin-like protein FLA13	-	2e-17	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.12706.1.S1_at	At3g05980	-	-	2e-12	At3g07370	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.13252.1.S1_at	At3g05980	-	-	2e-29	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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