Co-expression analysis

Gene ID	HV_CEb0016H05f2_at
Gene name
Homology with Arabidopsis	Similar to At3g29575: AFP3 (ABI FIVE BINDING PROTEIN 3) (HF=4e-1)
Module size	6 genes
NF	0.15
%ile	18.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.92	HV_CEb0016H05f2_at	HV_CEb0016H05f2	-	-	4e-1	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig7010_at	Contig7010	-	-	3e-62	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	Contig15715_at	Contig15715	-	-	4e-1	At5g27690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	HV11B04u_x_at	HV11B04u	-	-	6e-2	At2g21250	mannose 6-phosphate reductase (NADPH-dependent), putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig25090_at	Contig25090	-	-	2e+0	At4g21540	SPHK1 (SPHINGOSINE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig12406_at	Contig12406	-	-	2e-7	At1g76850	SEC5A (EXOCYST COMPLEX COMPONENT SEC5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	99.2	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
7.9	98.7	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.8	98.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
5.5	97.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.2	96.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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