Co-expression analysis

Gene ID	HV_CEb0004J20f_s_at
Gene name
Homology with Arabidopsis	Similar to At5g63634: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.23
%ile	28.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.91	HV_CEb0004J20f_s_at	HV_CEb0004J20f	-	-	2e+0	At5g63634	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig17974_at	Contig17974	-	-	2e-3	At2g24550	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig17972_at	Contig17972	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	HK04D15u_at	HK04D15u	-	-	3e+0	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.91	rbasd11p06_s_at	rbasd11p06	-	-	4e+0	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.90	Contig1881_s_at	Contig1881	-	-	7e-1	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.7	92.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.209960.1.S1_s_at, orthologous to the query gene, HV_CEb0004J20f_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	PtpAffx.209960.1.S1_s_at	At5g63634	cytochrome P450 /// cytochrome P450	-	2e-4	At1g11610	CYP71A18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.216683.1.S1_s_at	At5g63634	hypothetical protein	-	3e-6	At5g38950	germin-like protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.108897.1.S1_at	At5g63634	hypothetical protein	-	3e-14	At4g35750	Rho-GTPase-activating protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.52652.1.A1_at	At5g63634	hypothetical protein	-	7e-3	At1g69320	CLE10 (CLAVATA3/ESR-RELATED 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.11250.1.S1_at	At5g63634	-	-	5e-4	At1g63220	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.137722.1.S1_at	At5g63634	hypothetical protein	-	5e-49	At5g60760	2-phosphoglycerate kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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