Co-expression analysis

Gene ID	HV_CEa0017M22f_at
Gene name
Homology with Arabidopsis	Similar to At3g54300: ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) (HF=1e+1)
Module size	6 genes
NF	0.58
%ile	80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.95	HV_CEa0017M22f_at	HV_CEa0017M22f	-	-	1e+1	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig7254_at	Contig7254	-	-	6e+0	At2g17880	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.94	Contig15180_at	Contig15180	-	-	2e-1	At1g57690	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig23961_at	Contig23961	-	-	3e-1	At4g14450	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig4560_at	Contig4560	-	-	2e-1	At1g29000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig11462_at	Contig11462	-	-	8e-5	At5g41770	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.5	98.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4	98.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.3	98.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.7	97.7	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.5	97.6	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.7	96.9	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage