Co-expression analysis

Gene ID	HV_CEa0015C01r2_at
Gene name
Homology with Arabidopsis	Similar to At3g56190: ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) (HF=3e-1)
Module size	24 genes
NF	0.54
%ile	75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	0.74	HV_CEa0015C01r2_at	HV_CEa0015C01r2	-	-	3e-1	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.87	HB15H22r_at	HB15H22r	-	-	7e+0	At5g13620	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.87	EBem08_SQ003_M18_at	EBem08_SQ003_M18	-	-	6e-1	At1g62790	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.89	HU13H10u_at	HU13H10u	-	-	4e+0	At5g19530	ACL5 (ACAULIS 5)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.90	EBem10_SQ004_P21_x_at	EBem10_SQ004_P21	-	-	5e-3	At1g16820	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.88	Contig25606_at	Contig25606	-	-	2e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.88	Contig316_s_at	Contig316	-	-	2e-24	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.87	Contig10393_at	Contig10393	-	-	2e-3	At1g47720	OSB1 (Organellar Single-stranded)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.84	Contig15998_at	Contig15998	-	-	4e-1	At1g58380	XW6	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.87	EBem05_SQ004_F24_x_at	EBem05_SQ004_F24	-	-	2e-15	At1g16820	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.91	Mla13_div5_x_at	Mla13_div5	-	-	2e-1	At5g22660	F-box family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.87	Contig20165_at	Contig20165	-	-	3e-23	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.86	Contig23720_at	Contig23720	-	-	5e-1	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.88	Contig14991_at	Contig14991	-	-	2e+0	At4g15940	fumarylacetoacetate hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.89	Contig24593_at	Contig24593	-	-	5e+0	At5g18780	F-box family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.86	Contig7669_s_at	Contig7669	-	-	1e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.86	Contig7671_at	Contig7671	-	-	4e-34	At2g27200	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	Contig20758_at	Contig20758	-	-	2e+0	At1g26796	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.86	Contig18117_at	Contig18117	-	-	3e+0	At3g12930	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	Contig22987_at	Contig22987	-	-	1e+0	At5g44860	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.86	Contig17644_at	Contig17644	-	-	5e-4	At3g16190	isochorismatase hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.88	HX03K20u_at	HX03K20u	-	-	2e+0	At1g47720	OSB1 (Organellar Single-stranded)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	HD04N07u_at	HD04N07u	-	-	4e+0	At5g52940	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	Mla12DH_orf_3pri12_s_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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