Co-expression analysis

Gene ID	HV_CEa0011G08r2_x_at
Gene name
Homology with Arabidopsis	Similar to At3g25265: LCR4 (Low-molecular-weight cysteine-rich 4) (HF=1e+0)
Module size	6 genes
NF	0.06
%ile	7.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.89	HV_CEa0011G08r2_x_at	HV_CEa0011G08r2	-	-	1e+0	At3g25265	LCR4 (Low-molecular-weight cysteine-rich 4)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.91	HVSMEa0003D12r2_at	HVSMEa0003D12r2	-	-	3e+0	At4g00335	RHB1A	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.87	HO07N21S_at	HO07N21S	-	-	9e-1	At3g28917	MIF2 (MINI ZINC FINGER 2)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig13509_at	Contig13509	-	-	5e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.90	Contig23437_at	Contig23437	-	-	2e+0	At5g66870	ASL1	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.90	Contig23856_at	Contig23856	-	-	1e+0	At1g67590	remorin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4	98.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.4	97.5	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.26742.1.S1_at, orthologous to the query gene, HV_CEa0011G08r2_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.26742.1.S1_at	At3g25265	-	-	2e+0	At4g38100	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.26738.1.S1_at	At3g25265	-	-	6e-2	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.54347.1.S1_at	At3g25265	-	-	1e+0	At1g14600	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.54249.1.S1_at	At3g25265	-	-	1e+1	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.26324.1.S1_at	At3g25265	-	-	4e+0	At2g25780	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.108236.1.S1_at	At3g25265	-	-	3e+0	At5g24900	CYP714A2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage