Co-expression analysis

Gene ID	HV_CEa0009C07r2_at
Gene name
Homology with Arabidopsis	Similar to At5g65510: AIL7 (AINTEGUMENTA-like 7) (HF=3e-1)
Module size	29 genes
NF	0.32
%ile	43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.87	HV_CEa0009C07r2_at	HV_CEa0009C07r2	-	-	3e-1	At5g65510	AIL7 (AINTEGUMENTA-like 7)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.92	HV14B03u_at	HV14B03u	-	-	3e+0	At4g36170	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig23856_at	Contig23856	-	-	1e+0	At1g67590	remorin family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.92	Contig13509_at	Contig13509	-	-	5e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.92	Contig20409_at	Contig20409	-	-	2e-1	At1g49230	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	HT06B11r_at	HT06B11r	-	-	3e-1	At3g48344	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	Contig13380_at	Contig13380	-	-	2e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	EBro08_SQ004_I03_at	EBro08_SQ004_I03	-	-	5e+0	At4g34750	auxin-responsive protein, putative / small auxin up RNA (SAUR_E)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	HW05P14u_at	HW05P14u	-	-	2e-1	At1g64830	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	rbaal17m22_at	rbaal17m22	-	-	3e-1	At5g28615	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	HV12N12u_at	HV12N12u	-	-	7e-2	At5g41200	AGL75 (AGAMOUS-LIKE 75)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig16016_at	Contig16016	-	-	2e+0	At1g59710	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig5979_at	Contig5979	-	-	4e-15	At5g20080	NADH-cytochrome b5 reductase, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	HVSMEm0021I24r2_at	HVSMEm0021I24r2	-	-	3e+0	At1g68650	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.91	EBro01_SQ001_I18_at	EBro01_SQ001_I18	-	-	3e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	HV11D10u_s_at	HV11D10u	-	-	1e+1	At5g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig17116_at	Contig17116	-	-	2e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig17645_at	Contig17645	-	-	2e+0	At3g56810	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	HT08O05u_at	HT08O05u	-	-	7e-1	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	HY10O14u_x_at	HY10O14u	-	-	6e-2	At2g47270	transcription factor/ transcription regulator	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig4515_at	Contig4515	-	-	4e-3	At1g53210	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.97	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	EBro01_SQ003_J07_at	EBro01_SQ003_J07	-	-	3e+0	At1g66475	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	EBpi01_SQ003_C12_at	EBpi01_SQ003_C12	-	-	5e-2	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage