Co-expression analysis

Gene ID	HV_CEa0006M01r2_at
Gene name
Homology with Arabidopsis	Similar to At2g27750: nucleolar matrix protein-related (HF=3e-1)
Module size	6 genes
NF	0.35
%ile	47.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.94	HV_CEa0006M01r2_at	HV_CEa0006M01r2	-	-	3e-1	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig9526_at	Contig9526	-	-	2e-6	At4g34040	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	Contig20174_at	Contig20174	-	-	5e-3	At5g26670	pectinacetylesterase, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	Contig13368_at	Contig13368	-	-	5e+0	At5g38890	exoribonuclease-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig6120_at	Contig6120	-	-	3e-6	At3g01450	binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.2	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.3	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.9	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.6	92.3	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
2.5	91.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.2	90.3	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.2	90.3	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.2	90.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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