Co-expression analysis

Gene ID HV_CEa0006I19r2_at
Gene name
Homology with ArabidopsisSimilar to At3g60961: ATP binding / nucleobase, nucleoside, nucleotide kinase (HF=2e-1)
Module size 6 genes
NF 0.49
%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.79HV_CEa0006I19r2_atHV_CEa0006I19r2--2e-1At3g60961ATP binding / nucleobase, nucleoside, nucleotide kinaseO.I.H.G.S.X.
0.5572.00.77Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.5066.90.79HVSMEi0013F11r2_atHVSMEi0013F11r2--2e+0At3g44310NIT1O.I.H.G.S.X.
0.4356.40.73Contig9001_atContig9001--3e-3At4g08810SUB1O.I.H.G.S.X.
0.4356.40.73Contig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4053.10.79Contig5001_s_atContig5001--3e-1At5g09440EXL4 (EXORDIUM LIKE 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.3GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.698.2GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.198.0GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM282027Malting_day1_Legacy_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.097.2GSM282021Malting_day4_Legacy_rep 2GSE11200Expression data from malting barley seedsLink to GEO
4.997.1GSM282020Malting_day4_Legacy_rep 3GSE11200Expression data from malting barley seedsLink to GEO
4.997.1GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.997.1GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.796.9GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.132193.1.A1_at, orthologous to the query gene, HV_CEa0006I19r2_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7694.3PtpAffx.132193.1.A1_atAt3g60961--3e-1At3g16880F-box protein-relatedO.I.H.G.S.X.
0.2950.5PtpAffx.206516.1.S1_atAt3g60961hypothetical protein-2e-1At3g58410meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.2950.5PtpAffx.221642.1.S1_atAt3g60961hypothetical protein-1e+0At3g18990VRN1 (REDUCED VERNALIZATION RESPONSE 1)O.I.H.G.S.X.
0.2747.1PtpAffx.16406.1.S1_atAt3g60961--2e-1At4g12600ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.2645.2Ptp.373.1.A1_atAt3g60961hypothetical protein-4e-1At2g28470BGAL8 (beta-galactosidase 8)O.I.H.G.S.X.
0.2543.6PtpAffx.207507.1.S1_atAt3g60961hypothetical protein-1e+0At3g11591unknown proteinO.I.H.G.S.X.
0.1626.9PtpAffx.1578.2.S1_atAt3g60961hypothetical protein-5e+0At3g18820ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)O.I.H.G.S.X.
0.1321.6PtpAffx.221219.1.S1_atAt3g60961hypothetical protein-3e-1At1g15680F-box family proteinO.I.H.G.S.X.
0.1016.3PtpAffx.202840.1.S1_atAt3g60961hypothetical protein-4e+0At5g20020RAN2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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