Co-expression analysis

Gene ID HV_CEa0006I19r2_at
Gene name
Homology with ArabidopsisSimilar to At3g60961: ATP binding / nucleobase, nucleoside, nucleotide kinase (HF=2e-1)
Module size 6 genes
NF 0.49
%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.79HV_CEa0006I19r2_atHV_CEa0006I19r2--2e-1At3g60961ATP binding / nucleobase, nucleoside, nucleotide kinaseO.I.H.G.S.X.
0.5572.00.77Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.5066.90.79HVSMEi0013F11r2_atHVSMEi0013F11r2--2e+0At3g44310NIT1O.I.H.G.S.X.
0.4356.40.73Contig9001_atContig9001--3e-3At4g08810SUB1O.I.H.G.S.X.
0.4356.40.73Contig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4053.10.79Contig5001_s_atContig5001--3e-1At5g09440EXL4 (EXORDIUM LIKE 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.3GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.698.2GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
6.198.0GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM282027Malting_day1_Legacy_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.097.2GSM282021Malting_day4_Legacy_rep 2GSE11200Expression data from malting barley seedsLink to GEO
4.997.1GSM282020Malting_day4_Legacy_rep 3GSE11200Expression data from malting barley seedsLink to GEO
4.997.1GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.997.1GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.796.9GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.46369.1.S1_at, orthologous to the query gene, HV_CEa0006I19r2_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5374.2GmaAffx.46369.1.S1_atAt3g60961--3e+0At5g12270oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.5576.3GmaAffx.60673.1.S1_atAt3g60961--3e+0At5g36001-O.I.H.G.S.X.
0.3346.1GmaAffx.11172.1.A1_atAt3g60961--4e+0At3g50900unknown proteinO.I.H.G.S.X.
0.3346.1GmaAffx.90069.1.S1_atAt3g60961--2e-23At1g21410SKP2AO.I.H.G.S.X.
0.3346.1GmaAffx.71245.1.S1_atAt3g60961--2e+0At1g26600CLE9 (CLAVATA3/ESR-RELATED 9)O.I.H.G.S.X.
0.2939.0Gma.15384.3.S1_atAt3g60961--8e-21At1g32070ATNSI (NUCLEAR SHUTTLE INTERACTING)O.I.H.G.S.X.
0.1923.7Gma.10580.2.S1_a_atAt3g609614-hydroxyphenylpyruvate dioxygenase-1e-6At1g06570PDS1 (PHYTOENE DESATURATION 1)O.I.H.G.S.X.
0.1721.2Gma.1959.3.S1_a_atAt3g60961--2e-1At2g02550nucleaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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