Co-expression analysis

Gene ID HV_CEa0002J17f2_x_at
Gene name
Homology with ArabidopsisSimilar to At5g43480: unknown protein (HF=3e+0)
Module size 25 genes
NF 0.52
%ile 73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.40.94HV_CEa0002J17f2_x_atHV_CEa0002J17f2--3e+0At5g43480unknown proteinO.I.H.G.S.X.
0.6581.40.95EBro08_SQ009_F01_atEBro08_SQ009_F01--2e-1At1g70490ARFA1DO.I.H.G.S.X.
0.5975.80.96baal1j07_atbaal1j07--5e-15At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.5874.90.95Contig22936_atContig22936--1e-1At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.5674.30.96HVSMEm0018O23r2_atHVSMEm0018O23r2--1e-3At4g23150protein kinase family proteinO.I.H.G.S.X.
0.5674.30.96Contig24225_atContig24225--2e-12At3g10360APUM4 (Arabidopsis Pumilio 4)O.I.H.G.S.X.
0.5470.30.95Contig22941_atContig22941--1e+0At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.5369.70.95AF474072_CDS-4_atAF474072_CDS-4--1e+0At5g05810ATL43O.I.H.G.S.X.
0.5369.70.96HY02C19u_atHY02C19u--5e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.5167.50.95Contig23272_atContig23272--2e+1At5g44550integral membrane family proteinO.I.H.G.S.X.
0.5167.50.95HVSMEa0002D20r2_s_atHVSMEa0002D20r2--1e+0At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.5066.90.95EBro02_SQ001_G12_atEBro02_SQ001_G12--6e-2At2g24190short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5066.90.96Contig23039_atContig23039--4e-2At2g45920U-box domain-containing proteinO.I.H.G.S.X.
0.5066.90.96Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.4963.70.96HVSMEl0006C17r2_x_atHVSMEl0006C17r2--1e+0At4g32090galactosyltransferaseO.I.H.G.S.X.
0.4963.70.96V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.
0.4863.20.95HVSMEg0004N03r2_atHVSMEg0004N03r2--2e+0At3g50360ATCEN2 (CENTRIN2)O.I.H.G.S.X.
0.4863.20.96HY06F24u_x_atHY06F24u--1e+1At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.4863.20.95S0001000057I10F1_atS0001000057I10F1--1e+1At3g06190BPM2 (BTB-POZ AND MATH DOMAIN 2)O.I.H.G.S.X.
0.4762.20.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.
0.4559.30.94HS06P18u_atHS06P18u--5e-1At3g22630PBD1 (20S PROTEASOME BETA SUBUNIT D1)O.I.H.G.S.X.
0.4559.30.95HC113H04_SK_atHC113H04_SK--3e+0At2g42410ZFP11 (ZINC FINGER PROTEIN 11)O.I.H.G.S.X.
0.4356.40.96HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.3747.90.96HD03N13u_atHD03N13u--2e+1At5g42591unknown proteinO.I.H.G.S.X.
0.3443.60.96Contig17900_atContig17900--6e+0At4g05170DNA binding / transcription factorO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.995.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.494.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM146360Golden Promise Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.394.6GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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