Co-expression analysis

Gene ID	HVSMEn0017F07r2_at
Gene name
Homology with Arabidopsis	Similar to At1g78560: bile acid:sodium symporter family protein (HF=3e-7)
Module size	7 genes
NF	0.36
%ile	48.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.89	HVSMEn0017F07r2_at	HVSMEn0017F07r2	-	-	3e-7	At1g78560	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.90	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.88	Contig12570_at	Contig12570	-	-	5e-29	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig16785_at	Contig16785	-	-	1e+0	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.90	Contig18921_at	Contig18921	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.89	Contig8334_at	Contig8334	-	-	1e+0	At1g29810	dehydratase family	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.91	Contig7564_at	Contig7564	-	-	4e-5	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.6	99.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.4	99.3	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.9	98.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.4	96.6	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.4	96.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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