Co-expression analysis

Gene ID HVSMEn0017F07r2_at
Gene name
Homology with ArabidopsisSimilar to At1g78560: bile acid:sodium symporter family protein (HF=3e-7)
Module size 7 genes
NF 0.36
%ile 48.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.89HVSMEn0017F07r2_atHVSMEn0017F07r2--3e-7At1g78560bile acid:sodium symporter family proteinO.I.H.G.S.X.
0.5572.00.90HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.
0.4661.00.88Contig12570_atContig12570--5e-29At3g53570AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)O.I.H.G.S.X.
0.4458.90.91Contig16785_atContig16785--1e+0At3g48330PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.3342.60.90Contig18921_atContig18921--1e+0At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.2021.10.89Contig8334_atContig8334--1e+0At1g29810dehydratase familyO.I.H.G.S.X.
0.1210.40.91Contig7564_atContig7564--4e-5At2g32080PUR ALPHA-1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.699.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
11.499.3GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
8.998.9GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.997.9GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.696.8GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.496.6GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.496.6GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.396.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM282030Malting_day4_Harrington_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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