Co-expression analysis

Gene ID HVSMEn0014H06r2_s_at
Gene name
Homology with ArabidopsisSimilar to At3g02150: PTF1 (PLASTID TRANSCRIPTION FACTOR 1) (HF=4e-2)
Module size 32 genes
NF 0.35
%ile 47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.93HVSMEn0014H06r2_s_atHVSMEn0014H06r2--4e-2At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.5470.30.95Contig11107_atContig11107--7e-4At2g45140PVA12 (PLANT VAP HOMOLOG 12)O.I.H.G.S.X.
0.4963.70.94Contig17929_atContig17929--2e+1Atmg01370-O.I.H.G.S.X.
0.4255.20.94Contig1952_atContig1952--7e-20At2g13360AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)O.I.H.G.S.X.
0.4255.20.94Contig162_x_atContig162--3e+0At1g68945unknown proteinO.I.H.G.S.X.
0.4153.90.95Contig18051_atContig18051--4e-1At1g75250ATRL6 (ARABIDOPSIS RAD-LIKE 6)O.I.H.G.S.X.
0.4053.10.95Contig10389_atContig10389--2e+0At5g67490unknown proteinO.I.H.G.S.X.
0.3950.50.96Contig16156_s_atContig16156--1e-4At1g71010phosphatidylinositol-4-phosphate 5-kinase family proteinO.I.H.G.S.X.
0.3849.50.95Contig11867_s_atContig11867--4e-1At1g03790SOM (SOMNUS)O.I.H.G.S.X.
0.3849.50.95Contig397_x_atContig397--0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.3747.90.95Contig9852_atContig9852--2e+1At5g62260DNA bindingO.I.H.G.S.X.
0.3747.90.95Contig11162_atContig11162--3e-26At1g60490ATVPS34O.I.H.G.S.X.
0.3647.10.96Contig15889_atContig15889--2e+0At4g29590methyltransferaseO.I.H.G.S.X.
0.3647.10.95Contig5727_atContig5727--1e-1At4g02340epoxide hydrolase, putativeO.I.H.G.S.X.
0.3647.10.95Contig1934_atContig1934--7e-13At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)O.I.H.G.S.X.
0.3545.10.95rbags1b22_s_atrbags1b22--2e-8At3g26560ATP-dependent RNA helicase, putativeO.I.H.G.S.X.
0.3443.60.96Contig5316_atContig5316--5e-1At1g11572-O.I.H.G.S.X.
0.3342.60.95Contig19553_atContig19553--1e-1At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.3342.60.94Contig1748_s_atContig1748--6e+0At2g35605SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.3138.60.95Contig8153_atContig8153--5e-42At3g09550protein bindingO.I.H.G.S.X.
0.3037.00.96Contig5475_atContig5475--5e+0At5g05960protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3037.00.95Contig6229_atContig6229--7e-7At2g40930UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)O.I.H.G.S.X.
0.3037.00.94Contig9660_atContig9660--1e-1At4g24750-O.I.H.G.S.X.
0.3037.00.96HA31E10r_s_atHA31E10r--1e+0At4g15620integral membrane family proteinO.I.H.G.S.X.
0.2935.50.96Contig16840_atContig16840--4e-1At5g22545unknown proteinO.I.H.G.S.X.
0.2835.50.95Contig10831_atContig10831--2e-1At1g17830unknown proteinO.I.H.G.S.X.
0.2630.40.95Contig25477_atContig25477--6e+0At5g33421unknown proteinO.I.H.G.S.X.
0.2528.90.95Contig10338_atContig10338--4e-2At5g54900ATRBP45A (RNA-binding protein 45A)O.I.H.G.S.X.
0.2427.20.95Contig7581_atContig7581--4e-3At1g31070UDP-N-acetylglucosamine pyrophosphorylase-relatedO.I.H.G.S.X.
0.2326.10.96Contig1188_s_atContig1188amylase/protease inhibitor-6e+0At5g05120zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2326.10.95Contig25611_atContig25611--2e-2At1g68870unknown proteinO.I.H.G.S.X.
0.2122.60.96HS09L19u_s_atHS09L19u--2e+0At3g30220unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.497.5GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.497.5GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM31120528-4_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.296.3GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.394.6GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.093.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage