Co-expression analysis

Gene ID HVSMEn0012P04f2_at
Gene name
Homology with ArabidopsisSimilar to At3g63030: MBD4 (HF=2e-1)
Module size 24 genes
NF 0.38
%ile 52.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.78HVSMEn0012P04f2_atHVSMEn0012P04f2--2e-1At3g63030MBD4O.I.H.G.S.X.
0.6885.10.89HF22K12r_atHF22K12r--5e+0At5g23680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.6380.30.88HB25J22r_x_atHB25J22r--9e+0At5g04790unknown proteinO.I.H.G.S.X.
0.5268.30.91Contig13375_atContig13375--3e-1At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5167.50.87Contig7312_s_atContig7312--7e-2At2g32650-O.I.H.G.S.X.
0.5066.90.91Contig21007_atContig21007--1e+0At2g27520F-box family proteinO.I.H.G.S.X.
0.4661.00.88Contig3371_atContig3371--6e-7At1g62710BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.4255.20.88Contig4155_atContig4155--2e-38At5g54310AGD5 (ARF-GAP domain 5)O.I.H.G.S.X.
0.4053.10.86Contig14781_atContig14781--1e+0At5g18970AWPM-19-like membrane family proteinO.I.H.G.S.X.
0.3849.50.91Contig10576_atContig10576--1e-21At4g33080protein kinase, putativeO.I.H.G.S.X.
0.3747.90.89HY03I16T_atHY03I16T--4e+0At5g20100unknown proteinO.I.H.G.S.X.
0.3747.90.84HB29O17r_x_atHB29O17r--6e+0At5g44850-O.I.H.G.S.X.
0.3747.90.87Contig8208_atContig8208--2e-7At1g21460nodulin MtN3 family proteinO.I.H.G.S.X.
0.3545.10.83Contig7498_atContig7498--5e+0At4g39880ribosomal protein L23 family proteinO.I.H.G.S.X.
0.3545.10.88HA22G05r_x_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.3342.60.86Contig5196_atContig5196--2e-24At4g02120CTP synthase, putative / UTP--ammonia ligase, putativeO.I.H.G.S.X.
0.3240.30.93S0001000056K18F1_x_atS0001000056K18F1--7e-1At1g77440PBC2O.I.H.G.S.X.
0.3138.60.86S0001100126A06F1_x_atS0001100126A06F1--7e-4At1g32900starch synthase, putativeO.I.H.G.S.X.
0.3037.00.88HA22G05r_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.3037.00.89Contig8947_atContig8947--4e-2At3g20800rcd1-like cell differentiation protein, putativeO.I.H.G.S.X.
0.2935.50.88Contig953_atContig953--2e+0At2g29050ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)O.I.H.G.S.X.
0.2935.50.91Contig9121_atContig9121--3e-6At3g01550PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)O.I.H.G.S.X.
0.2630.40.86Contig3992_atContig3992--1e-40At1g14670endomembrane protein 70, putativeO.I.H.G.S.X.
0.2528.90.83Contig3018_atContig3018--2e+0At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.6GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.796.9GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.795.5GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.795.5GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.494.8GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.093.8GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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