Co-expression analysis

Gene ID	HVSMEn0005O13f_x_at
Gene name
Homology with Arabidopsis	Similar to At2g17200: ubiquitin family protein (HF=2e-1)
Module size	26 genes
NF	0.36
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.90	HVSMEn0005O13f_x_at	HVSMEn0005O13f	-	-	2e-1	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.95	Contig17116_at	Contig17116	-	-	2e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.94	HVSMEa0006I22r2_x_at	HVSMEa0006I22r2	-	-	5e-2	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.92	HVSMEa0011L07r2_at	HVSMEa0011L07r2	-	-	1e+1	At5g37270	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	HT10M15u_at	HT10M15u	-	-	4e+0	At1g55310	SR33	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.93	rbah36c02_at	rbah36c02	-	-	2e-11	At5g60920	COB (COBRA)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	RGH1a_s_at	Mla10_orf_3pri12	-	-	2e+0	At3g62920	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	HVSMEm0021I24r2_at	HVSMEm0021I24r2	-	-	3e+0	At1g68650	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig6442_at	Contig6442	-	-	2e-1	At2g38920	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	EBro08_SQ004_P19_at	EBro08_SQ004_P19	-	-	4e+0	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	HM02O11r_at	HM02O11r	-	-	4e+0	At3g21730	dihydroneopterin aldolase family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	HT11A16u_x_at	HT11A16u	-	-	2e+0	At1g64080	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	HU05B08u_at	HU05B08u	-	-	3e+0	At1g58007	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig23296_at	Contig23296	-	-	1e-17	At1g02190	CER1 protein, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	HU12L19u_at	HU12L19u	-	-	4e+0	At5g46790	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	HZ47I09r_at	HZ47I09r	-	-	7e-1	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	EBro08_SQ011_O23_at	EBro08_SQ011_O23	-	-	1e+0	At1g03430	AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig23458_at	Contig23458	-	-	5e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig5979_at	Contig5979	-	-	4e-15	At5g20080	NADH-cytochrome b5 reductase, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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