Co-expression analysis

Gene ID	HVSMEm0020I01r2_at
Gene name
Homology with Arabidopsis	Similar to At4g02541: unknown protein (HF=3e+0)
Module size	17 genes
NF	0.30
%ile	39.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.4	0.93	HVSMEm0020I01r2_at	HVSMEm0020I01r2	-	-	3e+0	At4g02541	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	EBro08_SQ004_P19_at	EBro08_SQ004_P19	-	-	4e+0	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	HU12L19u_at	HU12L19u	-	-	4e+0	At5g46790	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	HS17B03u_at	HS17B03u	-	-	4e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig23296_at	Contig23296	-	-	1e-17	At1g02190	CER1 protein, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	HU11A09u_at	HU11A09u	-	-	2e-1	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	HVSMEf0019H01r2_at	HVSMEf0019H01r2	-	-	1e+1	At3g27460	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	HU03K01u_at	HU03K01u	-	-	1e+0	At2g34110	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	HV_CEa0012K03r2_x_at	HV_CEa0012K03r2	-	-	3e+0	At2g07215	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	HVSMEk0009B02r2_at	HVSMEk0009B02r2	-	-	6e-2	At1g72420	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	HVSMEc0014E22r2_at	HVSMEc0014E22r2	-	-	1e+1	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	HS09A23u_x_at	HS09A23u	-	-	3e+0	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	HVSMEm0013I03r2_at	HVSMEm0013I03r2	-	-	5e+0	At3g08990	yippee family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.1	94.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.8	93.1	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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