Co-expression analysis

Gene ID HVSMEm0012K15r2_at
Gene name
Homology with ArabidopsisSimilar to At1g76500: SOB3 (SUPPRESSOR OF PHYB-4#3) (HF=7e-2)
Module size 6 genes
NF 0.18
%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.92HVSMEm0012K15r2_atHVSMEm0012K15r2--7e-2At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)O.I.H.G.S.X.
0.4458.90.96Contig19463_atContig19463--6e+0At3g26270CYP71B25O.I.H.G.S.X.
0.2528.90.96Contig9392_atContig9392--5e+0At5g62780DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.1311.60.96Contig9706_atContig9706--2e-4At2g33610ATSWI3B (SWITCH SUBUNIT 3)O.I.H.G.S.X.
0.108.40.96Contig13550_atContig13550--7e-7At5g42660unknown proteinO.I.H.G.S.X.
0.097.40.96Contig15852_atContig15852--1e-33At1g29940NRPA2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.598.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.797.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.197.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.795.5GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM282021Malting_day4_Legacy_rep 2GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM282027Malting_day1_Legacy_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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