Co-expression analysis

Gene ID	HVSMEm0012K15r2_at
Gene name
Homology with Arabidopsis	Similar to At1g76500: SOB3 (SUPPRESSOR OF PHYB-4#3) (HF=7e-2)
Module size	6 genes
NF	0.18
%ile	22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	HVSMEm0012K15r2_at	HVSMEm0012K15r2	-	-	7e-2	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig19463_at	Contig19463	-	-	6e+0	At3g26270	CYP71B25	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig9706_at	Contig9706	-	-	2e-4	At2g33610	ATSWI3B (SWITCH SUBUNIT 3)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.96	Contig13550_at	Contig13550	-	-	7e-7	At5g42660	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.96	Contig15852_at	Contig15852	-	-	1e-33	At1g29940	NRPA2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.5	98.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage