Co-expression analysis

Gene ID	HVSMEm0009E18r2_at
Gene name
Homology with Arabidopsis	Similar to At3g59670: unknown protein (HF=7e-1)
Module size	14 genes
NF	0.35
%ile	46.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.91	HVSMEm0009E18r2_at	HVSMEm0009E18r2	-	-	7e-1	At3g59670	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig24198_at	Contig24198	-	-	9e-2	At2g19510	LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig11462_at	Contig11462	-	-	8e-5	At5g41770	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	Contig14003_at	Contig14003	-	-	4e-82	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	HV_CEa0008J10r2_at	HV_CEa0008J10r2	-	-	4e+0	At3g61310	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig6399_at	Contig6399	-	-	5e-9	At3g07810	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	HVSMEm0003A13r2_at	HVSMEm0003A13r2	-	-	1e+0	At5g63500	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig25106_at	Contig25106	-	-	4e+0	At5g64990	AtRABH1a (Arabidopsis Rab GTPase homolog H1a)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig20268_at	Contig20268	-	-	4e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig19799_at	Contig19799	-	-	2e-2	At1g69430	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	HV_CEa0008P09r2_s_at	HV_CEa0008P09r2	-	-	1e+0	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	HU08L13u_at	HU08L13u	-	-	5e+0	At5g61280	remorin family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig15909_at	Contig15909	-	-	4e+0	At5g39920	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig22623_at	Contig22623	-	-	5e-3	At5g20400	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM160819	38% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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