Co-expression analysis

Gene ID	HVSMEm0008L21r2_at
Gene name
Homology with Arabidopsis	Similar to At3g05020: ACP1 (acyl carrier protein 1) (HF=5e+0)
Module size	7 genes
NF	0.41
%ile	57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.88	HVSMEm0008L21r2_at	HVSMEm0008L21r2	-	-	5e+0	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig15918_at	Contig15918	-	-	2e+0	At5g43285	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.87	Contig12759_at	Contig12759	-	-	7e-19	At4g33030	SQD1	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.87	Contig5766_at	Contig5766	-	-	7e-7	At2g24060	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.89	Contig6933_s_at	Contig6933	-	-	3e-1	At3g56340	40S ribosomal protein S26 (RPS26C)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.88	Contig14020_at	Contig14020	-	-	4e-7	At3g18170	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	HVSMEl0002K19r2_at	HVSMEl0002K19r2	-	-	7e+0	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
36.6	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.0	99.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.4	94.8	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.0	93.8	GSM71148	OWB-R unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.0	93.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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