Co-expression analysis

Gene ID	HVSMEm0008B04r2_s_at
Gene name	UDP-D-glucose epimerase 1
Homology with Arabidopsis	Similar to At4g23920: UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) (HF=5e-9)
Module size	20 genes
NF	0.13
%ile	15.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.87	HVSMEm0008B04r2_s_at	HVSMEm0008B04r2	UDP-D-glucose epimerase 1	-	5e-9	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig25213_at	Contig25213	-	-	2e+0	At5g39920	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig15176_at	Contig15176	-	-	2e+0	At3g47790	ATATH7	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.93	Contig12195_at	Contig12195	-	-	3e+0	At1g67910	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	HA02d18r_at	HA02d18r	-	-	1e+0	At5g13250	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig11317_at	Contig11317	-	-	3e-9	At2g37860	LCD1 (LOWER CELL DENSITY 1)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig16450_at	Contig16450	-	-	2e-1	At5g50136	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig10514_at	Contig10514	-	-	1e-2	At5g67360	ARA12	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig10510_at	Contig10510	-	-	9e-20	At1g13900	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig9199_at	Contig9199	-	-	4e+0	At3g22050	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig14394_at	Contig14394	-	-	4e-1	At2g20625	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig15508_at	Contig15508	-	-	3e+0	At2g36000	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	HD12G13r_at	HD12G13r	-	-	1e-9	At5g66030	ATGRIP	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig15953_at	Contig15953	-	-	5e-8	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	Contig7551_at	Contig7551	-	-	2e-25	At3g10640	VPS60.1	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.91	HVSMEb0013I22f_x_at	HVSMEb0013I22f	-	-	6e-1	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.94	Contig14279_at	Contig14279	-	-	6e+0	At1g77290	tetrachloro-p-hydroquinone reductive dehalogenase-related	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig9663_at	Contig9663	-	-	9e-1	At2g43390	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	HD08D07r_s_at	HD08D07r	-	-	9e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig4412_at	Contig4412	-	-	6e-15	At1g79940	ATERDJ2A	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4	91.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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