Co-expression analysis

Gene ID HVSMEm0005J13r2_at
Gene name
Homology with ArabidopsisSimilar to At3g03800: SYP131 (SYNTAXIN OF PLANTS 131) (HF=3e-4)
Module size 7 genes
NF 0.41
%ile 57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.94HVSMEm0005J13r2_atHVSMEm0005J13r2--3e-4At3g03800SYP131 (SYNTAXIN OF PLANTS 131)O.I.H.G.S.X.
0.6380.30.95Contig14455_atContig14455--4e-16At1g75760ER lumen protein retaining receptor family proteinO.I.H.G.S.X.
0.5975.80.94Contig19631_atContig19631--4e-1At2g04880ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)O.I.H.G.S.X.
0.5066.90.95Contig12406_atContig12406--2e-7At1g76850SEC5A (EXOCYST COMPLEX COMPONENT SEC5)O.I.H.G.S.X.
0.4762.20.95Contig13187_atContig13187--1e-2At1g67320DNA primase, large subunit familyO.I.H.G.S.X.
0.2935.50.95EBro03_SQ005_C24_s_atEBro03_SQ005_C24--4e+0At5g40180unknown proteinO.I.H.G.S.X.
0.2224.20.94Contig26418_atContig26418--2e+0At4g32260ATP synthase familyO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.599.9GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
7.398.5GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
7.298.5GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
5.797.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.494.8GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.394.6GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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