Co-expression analysis

Gene ID HVSMEm0003C21r2_at
Gene name
Homology with ArabidopsisSimilar to At5g23470: NLI interacting factor (NIF) family protein (HF=5e+0)
Module size 7 genes
NF 0.50
%ile 69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.92HVSMEm0003C21r2_atHVSMEm0003C21r2--5e+0At5g23470NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.6784.70.94Contig4157_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.5774.90.93Contig6618_atContig6618--4e-1At5g51180unknown proteinO.I.H.G.S.X.
0.4863.20.94Contig9016_atContig9016--9e-7At5g22070unknown proteinO.I.H.G.S.X.
0.4356.40.94Contig1356_s_atContig1356--4e+0At4g02450glycine-rich proteinO.I.H.G.S.X.
0.3240.30.94Contig9390_atContig9390--8e-7At1g71190SAG18 (SENESCENCE ASSOCIATED GENE 18)O.I.H.G.S.X.
0.2835.50.94Contig6619_atContig6619--2e-3At5g51180unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5774.90.86Contig1815_atContig1815--1e-11At1g61520LHCA3O.I.H.G.S.X.
0.5674.30.91Contig19589_atContig19589--2e+0At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.5674.30.92Contig15345_atContig15345--7e-3At5g05070zinc ion bindingO.I.H.G.S.X.
0.5066.90.91Contig195_atContig195--2e-19At2g4020560S ribosomal protein L41 (RPL41C)O.I.H.G.S.X.
0.4661.00.92HA10J02u_atHA10J02u--1e+0At2g03610F-box family proteinO.I.H.G.S.X.
0.4458.90.91Contig3168_atContig3168--1e-24At5g60860AtRABA1f (Arabidopsis Rab GTPase homolog A1f)O.I.H.G.S.X.
0.4053.10.87Contig18091_atContig18091--2e+0At5g02020unknown proteinO.I.H.G.S.X.
0.4053.10.88Contig15251_atContig15251--3e+0At5g05340peroxidase, putativeO.I.H.G.S.X.
0.4053.10.94HB14O12r_atHB14O12r--4e+0At5g24316proline-rich family proteinO.I.H.G.S.X.
0.3647.10.92Contig10076_atContig10076--5e-15At4g13020MHKO.I.H.G.S.X.
0.3342.60.88Contig5204_atContig5204--5e-1At5g47150YDG/SRA domain-containing proteinO.I.H.G.S.X.
0.3342.60.89Contig6984_s_atContig6984--2e-4At4g31580SRZ-22O.I.H.G.S.X.
0.3240.30.90Contig17670_atContig17670--3e+0At5g48420unknown proteinO.I.H.G.S.X.
0.3240.30.93Contig1470_s_atContig1470--6e-3At4g00610DNA-binding storekeeper protein-relatedO.I.H.G.S.X.
0.3138.60.90Contig9210_atContig9210--1e-3At1g77350unknown proteinO.I.H.G.S.X.
0.3138.60.83Contig14716_atContig14716--7e-7At1g30820CTP synthase, putative / UTP--ammonia ligase, putativeO.I.H.G.S.X.
0.3138.60.94Contig1146_atContig1146--8e-3At3g09480histone H2B, putativeO.I.H.G.S.X.
0.3037.00.85Contig20681_atContig20681--3e-7At1g53140dynamin family proteinO.I.H.G.S.X.
0.2935.50.86Contig14367_atContig14367--6e-1At1g48720unknown proteinO.I.H.G.S.X.
0.2935.50.87rbags1g08_atrbags1g08--4e+0At5g12320ankyrin repeat family proteinO.I.H.G.S.X.
0.2835.50.89Contig17759_atContig17759--4e-1At3g1151040S ribosomal protein S14 (RPS14B)O.I.H.G.S.X.
0.2630.40.93Contig11557_atContig11557--2e+0At5g27860unknown proteinO.I.H.G.S.X.
0.2528.90.89Contig25366_atContig25366--3e+0At1g03360ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.898.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.598.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.597.6GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.496.6GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.096.0GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM398256Martin_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.695.3GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM398257Martin_3d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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