Co-expression analysis

Gene ID HVSMEm0003C21r2_at
Gene name
Homology with ArabidopsisSimilar to At5g23470: NLI interacting factor (NIF) family protein (HF=5e+0)
Module size 7 genes
NF 0.50
%ile 69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.92HVSMEm0003C21r2_atHVSMEm0003C21r2--5e+0At5g23470NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.6784.70.94Contig4157_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.5774.90.93Contig6618_atContig6618--4e-1At5g51180unknown proteinO.I.H.G.S.X.
0.4863.20.94Contig9016_atContig9016--9e-7At5g22070unknown proteinO.I.H.G.S.X.
0.4356.40.94Contig1356_s_atContig1356--4e+0At4g02450glycine-rich proteinO.I.H.G.S.X.
0.3240.30.94Contig9390_atContig9390--8e-7At1g71190SAG18 (SENESCENCE ASSOCIATED GENE 18)O.I.H.G.S.X.
0.2835.50.94Contig6619_atContig6619--2e-3At5g51180unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.898.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.598.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.597.6GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.496.6GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.096.0GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM398256Martin_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.695.3GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM398257Martin_3d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22666.1.S1_at, orthologous to the query gene, HVSMEm0003C21r2_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6786.3Ta.22666.1.S1_atAt5g23470--5e+0At1g73030VPS46.2O.I.H.G.S.X.
0.5779.2Ta.3133.2.S1_atAt5g23470--2e+1At5g35698-O.I.H.G.S.X.
0.5779.2Ta.3133.2.S1_x_atAt5g23470--2e+1At5g35698-O.I.H.G.S.X.
0.2227.1Ta.3133.1.S1_x_atAt5g23470--6e+0At5g52030TraB protein-relatedO.I.H.G.S.X.
0.1821.0Ta.30731.3.S1_x_atAt5g23470--2e+1At5g35900LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)O.I.H.G.S.X.
0.1618.2Ta.22457.1.S1_atAt5g23470--5e-1At4g28520CRU3 (CRUCIFERIN 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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