CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HVSMEm0003C21r2_at

Gene name
Homology with Arabidopsis Similar to At5g23470: NLI interacting factor (NIF) family protein (HF=5e+0)

Module size 7 genes

NF 0.50

%ile 69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.5 0.92 HVSMEm0003C21r2_at HVSMEm0003C21r2 - - 5e+0 At5g23470 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.67 84.7 0.94 Contig4157_at Contig4157 - - 1e-25 At1g60780 HAP13 (HAPLESS 13) O.I. H.G. S.X.
0.57 74.9 0.93 Contig6618_at Contig6618 - - 4e-1 At5g51180 unknown protein O.I. H.G. S.X.
0.48 63.2 0.94 Contig9016_at Contig9016 - - 9e-7 At5g22070 unknown protein O.I. H.G. S.X.
0.43 56.4 0.94 Contig1356_s_at Contig1356 - - 4e+0 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.32 40.3 0.94 Contig9390_at Contig9390 - - 8e-7 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) O.I. H.G. S.X.
0.28 35.5 0.94 Contig6619_at Contig6619 - - 2e-3 At5g51180 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.2 99.0 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8 98.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.5 98.6 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5 97.6 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4 96.6 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0 96.0 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9 95.8 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1 94.1 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.32955.1.A1_at, orthologous to the query gene, HVSMEm0003C21r2_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 PtpAffx.32955.1.A1_at At5g23470 - - 8e-1 At3g22845 emp24/gp25L/p24 protein-related O.I. H.G. S.X.
0.67 91.1 PtpAffx.216007.1.S1_at At5g23470 hypothetical protein - 9e-3 At5g03980 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.55 82.2 PtpAffx.203723.1.S1_at At5g23470 hypothetical protein - 2e+0 At4g30380 EXLB2 (EXPANSIN-LIKE B2 PRECURSOR) O.I. H.G. S.X.
0.50 78.6 PtpAffx.15454.1.S1_at At5g23470 - - 1e-1 At1g11570 nuclear transport factor 2 (NTF2), putative O.I. H.G. S.X.
0.50 78.6 PtpAffx.220008.1.S1_at At5g23470 hypothetical protein - 3e-4 At4g34060 DML3 (DEMETER-LIKE PROTEIN 3) O.I. H.G. S.X.
0.38 63.7 PtpAffx.63438.1.A1_at At5g23470 - - 6e+0 Atcg00820 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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