Co-expression analysis

Gene ID	HVSMEm0003C21r2_at
Gene name
Homology with Arabidopsis	Similar to At5g23470: NLI interacting factor (NIF) family protein (HF=5e+0)
Module size	7 genes
NF	0.50
%ile	69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.92	HVSMEm0003C21r2_at	HVSMEm0003C21r2	-	-	5e+0	At5g23470	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.93	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.94	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig9390_at	Contig9390	-	-	8e-7	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	Contig6619_at	Contig6619	-	-	2e-3	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.5	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.16354.1.S1_at, orthologous to the query gene, HVSMEm0003C21r2_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	HgAffx.16354.1.S1_at	At5g23470	-	-	6e-1	At5g53950	CUC2 (CUP-SHAPED COTYLEDON 2)	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.90612.1.S1_at	At5g23470	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select
0.06	9.0	PsAffx.psZG005xN22f_s_at	At5g23470	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.83815.1.S1_s_at	At5g23470	-	-	1e+0	At1g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.9706.1.S1_at	At5g23470	-	-	3e-28	At5g59160	TOPP2	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.5793.4.S1_s_at	At5g23470	-	-	8e-19	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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